View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15263_low_12 (Length: 236)
Name: NF15263_low_12
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15263_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 23384381 - 23384296
Alignment:
| Q |
137 |
tattgtggcaagtaggttctttttcttggtcaagggcaagttaaannnnnnncttgagtaatttcgtaagattgtagaaagaatta |
222 |
Q |
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| T |
23384381 |
tattgtggcaagtaggttctttttcttggtcaagtgcaagttaaaattttttcttgagtaatttcgtaagattgtaaaaagaatta |
23384296 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 23385296 - 23385250
Alignment:
| Q |
7 |
ctccactcacatttataaatcctattttcatttttgaaattatattc |
53 |
Q |
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| T |
23385296 |
ctccactcacatttataaatcctattttcatttttgaaattatattc |
23385250 |
T |
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