View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15263_low_3 (Length: 401)
Name: NF15263_low_3
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15263_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 27479087 - 27479470
Alignment:
| Q |
3 |
gtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgta |
102 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27479087 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagagagaagaacaaactcaacaaagtaaatatctcaaaaaattta-gaagaatgta |
27479185 |
T |
|
| Q |
103 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagata |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27479186 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
27479285 |
T |
|
| Q |
203 |
aattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcatatttgttca |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||| ||| |
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| T |
27479286 |
aattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatca |
27479385 |
T |
|
| Q |
301 |
tgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatc |
385 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27479386 |
tctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatc |
27479470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 27486147 - 27486530
Alignment:
| Q |
3 |
gtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgta |
102 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27486147 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaattta-gaagaatgta |
27486245 |
T |
|
| Q |
103 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagata |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27486246 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
27486345 |
T |
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| Q |
203 |
aattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcatatttgttca |
300 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||||||||||||||||| |||| |
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| T |
27486346 |
aattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattataccaccaccctttcaaattcaacctcatattttttca |
27486445 |
T |
|
| Q |
301 |
tgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatc |
385 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||| || ||||| |
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| T |
27486446 |
tccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatcttgtatc |
27486530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 385
Target Start/End: Complemental strand, 27506635 - 27506254
Alignment:
| Q |
2 |
tgtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgt |
101 |
Q |
| |
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||||||| || |||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||| |||| ||||||| | |
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| T |
27506635 |
tgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaaattta--gaagaatct |
27506538 |
T |
|
| Q |
102 |
aactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagat |
201 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
27506537 |
aactaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagttactaatattctttgcaaacctaattccaagat |
27506438 |
T |
|
| Q |
202 |
aaattattgtttgaaagagttaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcat |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27506437 |
aaattattgtttgaaagaattaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcat |
27506338 |
T |
|
| Q |
302 |
gcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagtatc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27506337 |
gcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtccagctagtatc |
27506254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 150 - 348
Target Start/End: Complemental strand, 27501137 - 27500938
Alignment:
| Q |
150 |
ttgtaagtatatttatagttactgagattctttgcaaacctaattccaagataaattattgtttgaaagagttaaaggataagatgatatagcatgtgg- |
248 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
249 |
gttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtt |
348 |
Q |
| |
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||||| | |||||||||| |||||||||||| | ||||| | |||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||| |
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| T |
27501037 |
gttgttttaagattgtaccccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgtt |
27500938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 27527001 - 27526881
Alignment:
| Q |
106 |
aatacttgaggatgtcaacgacttgtgttgtgtttg-aagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagataaa |
204 |
Q |
| |
|
||||||||| |||| ||| |||||||||| | |||| ||| || |||||||||||||||||||||||||| |||| || ||||||||||||||| |||| |
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|
| T |
27527001 |
aatacttgacgatgccaatgacttgtgttatttttggaag--aaattgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaa |
27526904 |
T |
|
| Q |
205 |
ttattgtttgaaagagttaaagg |
227 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
27526903 |
ttattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 27514472 - 27514403
Alignment:
| Q |
314 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagta |
383 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
27514472 |
acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagctagta |
27514403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 27524102 - 27524038
Alignment:
| Q |
315 |
cttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct |
379 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
27524102 |
cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagct |
27524038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
| Q |
314 |
acttcataattttgtaaacatgtttcagacatgttttcttcattat |
359 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27468898 |
acttcataattttgtaaacatgcttcagacatgttttcttcattat |
27468943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 27489721 - 27489645
Alignment:
| Q |
283 |
caacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattat |
359 |
Q |
| |
|
||||||||||||| |||||||||||| | |||| |||||||||||||||| || |||||||||||||||||||| |
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| T |
27489721 |
caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattat |
27489645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 27503499 - 27503439
Alignment:
| Q |
319 |
ataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct |
379 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |
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|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtccagct |
27503439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 27556962 - 27557024
Alignment:
| Q |
317 |
tcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct |
379 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| || ||| |||| ||||||| |
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| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagct |
27557024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 27508486 - 27508418
Alignment:
| Q |
315 |
cttcataattttgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagctagta |
383 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagta |
27508418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
| Q |
319 |
ataattttgtaaacatgtttcagacatgttttcttcattat |
359 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |
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| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattat |
27476173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 27473128 - 27473191
Alignment:
| Q |
154 |
aagtatatttatagttactgagattctttgcaaacctaattccaagataaattattgtttgaaa |
217 |
Q |
| |
|
||||||||||||||||| |||| |||| || ||| | ||||||||| ||||||||| ||||||| |
|
|
| T |
27473128 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattattatttgaaa |
27473191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 27526772 - 27526699
Alignment:
| Q |
289 |
catatttgttcatgcatta--actatcacttcataattttgtaaacatgtttcagacatg-ttttcttcattat |
359 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||||| |||||| |||||||||| ||||||||||||| |
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|
| T |
27526772 |
catatttgatcatgcattataactagtacttcataattttgaaaacattgttcagacatgtttttcttcattat |
27526699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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