View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15263_low_7 (Length: 296)

Name: NF15263_low_7
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15263_low_7
NF15263_low_7
[»] chr1 (1 HSPs)
chr1 (11-296)||(49889536-49889821)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 49889821 - 49889536
Alignment:
Q  11 tccaagaatatctgccaaaaaccagcaacatatacgggttaaaagaagcaatatctacttaatcacgttaaatatgtgtcgaaatcctttgccaatgctt 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49889821 tccaagaaaatctgccaaaaaccagcaacatatacgggttaaaagaagcaatatctacttaatcacgttaaatatgtgtcgaaatcctttgccaatgctt 49889722  T
Q  111 ctttgataatttgagacacactttttggaacnnnnnnnnggttttggaagaacggatgaaatagcaagtaggttgtgatagaaaagtgtagtaaaagtga 210  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49889721 ctttgataatttgagacacactttttggaacaaaaaaaaggttttggaagaacggatgaaatagcaagtaggttgtgatagaaaagtgtagtaaaagtga 49889622  T
Q  211 gctgggcaatgttagaaacagattggttcgtaagtcccaatcttgagcgaactagacgtaattcccgatcccaaacgaccgggaat 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49889621 gctgggcaatgttagaaacagattgattcgtaagtcccaatcttgagtgaactagacgtaattcccgatcccaaacgaccgggaat 49889536  T

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