View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15264_high_12 (Length: 237)
Name: NF15264_high_12
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15264_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34995245 - 34995007
Alignment:
| Q |
1 |
caacaatatcttattttgactcaacataactacgaactgaatgttcaaccataactataaataaataacaaaacatgaaagnnnnnnnnn--ttataata |
98 |
Q |
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| T |
34995245 |
caacaatattttattttgactcaacataactaccaactgaatgttcaaccataactataaataaataacaaaacatgaaaaaaaaaaacaaattataata |
34995146 |
T |
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| Q |
99 |
taataacatcaattaatgcaacacaattaaatcctagaaacaattcctaaccccgattctgttcgtcacatcaggttcnnnnnnnttcatcaaaaaatag |
198 |
Q |
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| T |
34995145 |
taataacatcaattaatgcaccacaattaaatcctaggaacaattcctaaccccgattctgttcgtcacatcaggttcaaaaaaattcatcaaaaaatag |
34995046 |
T |
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| Q |
199 |
aaatataaacgagttaaaagaaggtgtatttgagacaca |
237 |
Q |
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| T |
34995045 |
aaatataaacgagttaaaagaaggtgtatttgagacaca |
34995007 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 25715318 - 25715286
Alignment:
| Q |
44 |
ttcaaccataactataaataaataacaaaacat |
76 |
Q |
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| T |
25715318 |
ttcaaccataattataaataaataacaaaacat |
25715286 |
T |
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