View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15264_high_8 (Length: 359)
Name: NF15264_high_8
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15264_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 26 - 347
Target Start/End: Complemental strand, 30364970 - 30364650
Alignment:
| Q |
26 |
ttcttagaatgtataaacacaaatgcaaacttaattgacttgctttctcctttggtgcatgacatttaagtgggtggttgaaaattacaagtagtaattc |
125 |
Q |
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| T |
30364970 |
ttcttagaatgtataaacacaaatgcaaacttaattgacttgctttctcctttggtgcatgacatttaagtgggtggttgaaaattacaagtagtaattc |
30364871 |
T |
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| Q |
126 |
ctacgtaacactcaattaataggtatactacatgtttaggttgatatagattgtggaagagtaaaagaaatgtctcttatgatgcagaagctaaaggagt |
225 |
Q |
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| T |
30364870 |
ctacgtaacactcaattaataggtatactacatgtttaggttgatatagattgtggaagagtaaaagaaatgtctcttatgatgcagaagctaaaggggt |
30364771 |
T |
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| Q |
226 |
tcatcattgatggtctagtgagtgtggtccatggttggtgaacttggtacatgggttggaagtggagctgtcctataattggtccttctacatcctcaaa |
325 |
Q |
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| T |
30364770 |
tcatcattgatggtctagtgagtgtggtccatggttcgtgaacttggtacatgggttggaagaggagttgtcctataattggtcc-tctacatcctcaaa |
30364672 |
T |
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| Q |
326 |
aatttgtcctgcatgctaccta |
347 |
Q |
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| T |
30364671 |
aatttgtcctgcatgctaccta |
30364650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 30366813 - 30366724
Alignment:
| Q |
19 |
actatatttcttagaatgtataaacacaaatgcaaacttaattgacttgctttctcctttggtgcatgacatttaagtgggtggttgaaa |
108 |
Q |
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| T |
30366813 |
actatctttcttaaaatgtataaacacagatgcgaacttaattgacttgctttctccttcggtgcatgacatttaaatgggtggttgaaa |
30366724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 13066968 - 13066909
Alignment:
| Q |
18 |
tactatatttcttagaatgtataaacacaaatgcaaacttaattgacttgctttctcctt |
77 |
Q |
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| T |
13066968 |
tactatatttcttagaatgtataaacacaaatgcaaacttaattgacttgctctctcctt |
13066909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 31380158 - 31380086
Alignment:
| Q |
36 |
gtataaacacaaatgcaaacttaattgacttgctttctcctttggtgcatgacatttaagtgggtggttgaaa |
108 |
Q |
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| T |
31380158 |
gtataaacactaatgcaaacttaattgacttgctttctcctaaggtgcatgcgatttaagtgggtggttgaaa |
31380086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 31384802 - 31384751
Alignment:
| Q |
44 |
acaaatgcaaacttaattgacttgctttctcctttggtgcatgacatttaag |
95 |
Q |
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| T |
31384802 |
acaaatgcaaacttaattggcttgatttctccttaggtgcatgccatttaag |
31384751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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