View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15264_low_14 (Length: 215)

Name: NF15264_low_14
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15264_low_14
NF15264_low_14
[»] chr6 (20 HSPs)
chr6 (49-215)||(8850454-8850620)
chr6 (78-204)||(12988432-12988557)
chr6 (176-211)||(6512937-6512972)
chr6 (166-211)||(31071989-31072033)
chr6 (179-211)||(2378914-2378946)
chr6 (179-211)||(3597189-3597221)
chr6 (179-211)||(11401941-11401973)
chr6 (179-211)||(13004873-13004905)
chr6 (179-211)||(26942842-26942874)
chr6 (179-211)||(28112172-28112204)
chr6 (179-211)||(28665671-28665703)
chr6 (179-211)||(30655128-30655160)
chr6 (180-211)||(5259621-5259652)
chr6 (78-204)||(13021561-13021686)
chr6 (181-211)||(2845986-2846016)
chr6 (179-209)||(11247448-11247478)
chr6 (179-211)||(10289657-10289689)
chr6 (179-211)||(11126103-11126135)
chr6 (179-211)||(11188323-11188355)
chr6 (179-211)||(22561571-22561603)
[»] chr3 (39 HSPs)
chr3 (78-212)||(27298756-27298890)
chr3 (78-212)||(27308315-27308449)
chr3 (93-212)||(27308887-27309006)
chr3 (78-204)||(11636608-11636733)
chr3 (78-211)||(18542318-18542452)
chr3 (75-211)||(22360214-22360349)
chr3 (176-211)||(29344266-29344301)
chr3 (78-211)||(45896148-45896281)
chr3 (75-211)||(22993989-22994124)
chr3 (179-212)||(27091661-27091694)
chr3 (179-211)||(2873332-2873364)
chr3 (179-211)||(3840284-3840316)
chr3 (179-211)||(7486338-7486370)
chr3 (179-211)||(11190294-11190326)
chr3 (179-211)||(20729041-20729073)
chr3 (179-211)||(24125267-24125299)
chr3 (179-211)||(24128544-24128576)
chr3 (179-211)||(25584455-25584487)
chr3 (179-211)||(30690503-30690535)
chr3 (179-211)||(32287718-32287750)
chr3 (179-211)||(35751222-35751254)
chr3 (179-211)||(41976783-41976815)
chr3 (179-211)||(43926603-43926635)
chr3 (179-211)||(47051263-47051295)
chr3 (179-211)||(47054693-47054725)
chr3 (179-211)||(50461943-50461975)
chr3 (179-211)||(54723509-54723541)
chr3 (44-80)||(54834164-54834200)
chr3 (50-80)||(33389408-33389438)
chr3 (75-211)||(22370117-22370252)
chr3 (89-149)||(282495-282555)
chr3 (179-211)||(17040416-17040448)
chr3 (179-211)||(19301899-19301931)
chr3 (179-211)||(19305083-19305115)
chr3 (179-211)||(22783360-22783392)
chr3 (179-211)||(22787724-22787756)
chr3 (179-211)||(28008464-28008496)
chr3 (179-211)||(30220403-30220435)
chr3 (179-211)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (89-208)||(31395-31514)
[»] chr1 (22 HSPs)
chr1 (89-208)||(37907563-37907682)
chr1 (89-211)||(7635329-7635451)
chr1 (78-211)||(27332077-27332210)
chr1 (89-211)||(34066758-34066880)
chr1 (79-211)||(34732667-34732798)
chr1 (44-80)||(31697347-31697383)
chr1 (44-80)||(50124389-50124425)
chr1 (165-211)||(6071348-6071393)
chr1 (179-211)||(20398537-20398569)
chr1 (179-211)||(21018873-21018905)
chr1 (179-211)||(23022331-23022363)
chr1 (179-211)||(27536693-27536725)
chr1 (179-211)||(28110741-28110773)
chr1 (179-211)||(31204522-31204554)
chr1 (179-211)||(37184271-37184303)
chr1 (179-211)||(41058709-41058741)
chr1 (179-211)||(45961152-45961184)
chr1 (49-80)||(50123939-50123970)
chr1 (50-80)||(24509250-24509280)
chr1 (179-209)||(45941102-45941132)
chr1 (50-80)||(52750389-52750419)
chr1 (179-211)||(11668433-11668465)
[»] chr5 (25 HSPs)
chr5 (79-211)||(563530-563661)
chr5 (78-174)||(18765947-18766044)
chr5 (78-198)||(21914818-21914937)
chr5 (44-83)||(13824428-13824467)
chr5 (44-83)||(24041971-24042010)
chr5 (89-211)||(31575100-31575222)
chr5 (44-80)||(38385102-38385138)
chr5 (78-211)||(41877071-41877204)
chr5 (179-211)||(7270699-7270731)
chr5 (179-211)||(7624785-7624817)
chr5 (179-211)||(14016546-14016578)
chr5 (179-211)||(17664235-17664267)
chr5 (179-211)||(18952376-18952408)
chr5 (179-211)||(20055457-20055489)
chr5 (179-211)||(22129948-22129980)
chr5 (179-211)||(26753109-26753141)
chr5 (179-211)||(26896011-26896043)
chr5 (179-211)||(30066025-30066057)
chr5 (179-211)||(33551804-33551836)
chr5 (179-211)||(34831446-34831478)
chr5 (179-211)||(41306934-41306966)
chr5 (176-211)||(18239900-18239935)
chr5 (50-80)||(38385592-38385622)
chr5 (179-211)||(4099929-4099961)
chr5 (179-211)||(18032141-18032173)
[»] scaffold0233 (1 HSPs)
scaffold0233 (78-211)||(9620-9753)
[»] scaffold0034 (1 HSPs)
scaffold0034 (78-211)||(48709-48842)
[»] chr2 (28 HSPs)
chr2 (77-211)||(35521671-35521806)
chr2 (44-83)||(8892843-8892882)
chr2 (90-211)||(22630507-22630627)
chr2 (44-83)||(12602376-12602415)
chr2 (166-211)||(31427938-31427982)
chr2 (179-211)||(8888300-8888332)
chr2 (179-211)||(9185832-9185864)
chr2 (179-211)||(9189061-9189093)
chr2 (179-211)||(9966712-9966744)
chr2 (44-80)||(10708363-10708399)
chr2 (179-211)||(11348304-11348336)
chr2 (179-211)||(13972302-13972334)
chr2 (179-211)||(22020733-22020765)
chr2 (179-211)||(25960097-25960129)
chr2 (179-211)||(27266453-27266485)
chr2 (179-211)||(30190001-30190033)
chr2 (179-211)||(33310331-33310363)
chr2 (179-211)||(38015183-38015215)
chr2 (179-211)||(40781137-40781169)
chr2 (179-211)||(42369119-42369151)
chr2 (179-211)||(43723366-43723398)
chr2 (179-211)||(45453539-45453571)
chr2 (179-211)||(45456826-45456858)
chr2 (179-209)||(5105393-5105423)
chr2 (182-212)||(24234759-24234789)
chr2 (179-209)||(43208298-43208328)
chr2 (179-212)||(24238031-24238064)
chr2 (183-211)||(37280089-37280117)
[»] chr7 (23 HSPs)
chr7 (78-187)||(24917888-24917998)
chr7 (78-211)||(7227197-7227330)
chr7 (156-211)||(18562923-18562977)
chr7 (166-211)||(6603128-6603172)
chr7 (179-211)||(9405927-9405959)
chr7 (179-211)||(9865139-9865171)
chr7 (179-211)||(11398438-11398470)
chr7 (44-80)||(14682782-14682818)
chr7 (179-211)||(14683856-14683888)
chr7 (179-211)||(17730484-17730516)
chr7 (44-80)||(30474955-30474991)
chr7 (49-80)||(30474514-30474545)
chr7 (46-80)||(14682127-14682161)
chr7 (46-80)||(16956160-16956194)
chr7 (79-191)||(2090296-2090408)
chr7 (166-211)||(16165418-16165462)
chr7 (47-80)||(25443234-25443267)
chr7 (166-211)||(48645144-48645188)
chr7 (179-211)||(4596421-4596453)
chr7 (179-211)||(4695194-4695226)
chr7 (48-80)||(17238427-17238459)
chr7 (179-211)||(23225318-23225350)
chr7 (179-211)||(23234471-23234503)
[»] chr4 (35 HSPs)
chr4 (75-211)||(34018085-34018220)
chr4 (75-211)||(27691447-27691583)
chr4 (78-136)||(37740069-37740126)
chr4 (75-136)||(33493998-33494059)
chr4 (166-211)||(34320313-34320357)
chr4 (47-80)||(44183609-44183642)
chr4 (166-211)||(44809351-44809395)
chr4 (47-80)||(50282721-50282754)
chr4 (179-211)||(15163874-15163906)
chr4 (179-211)||(15405492-15405524)
chr4 (179-211)||(15436877-15436909)
chr4 (179-211)||(19820410-19820442)
chr4 (179-211)||(19827172-19827204)
chr4 (179-211)||(24150354-24150386)
chr4 (179-211)||(27677462-27677494)
chr4 (179-211)||(29324507-29324539)
chr4 (179-211)||(38283896-38283928)
chr4 (179-211)||(39501330-39501362)
chr4 (179-211)||(40903491-40903523)
chr4 (179-211)||(44164465-44164497)
chr4 (44-80)||(45044604-45044640)
chr4 (179-211)||(48637187-48637219)
chr4 (179-211)||(52006938-52006970)
chr4 (179-211)||(52531343-52531375)
chr4 (179-211)||(53094189-53094221)
chr4 (179-211)||(56195209-56195241)
chr4 (179-210)||(8877909-8877940)
chr4 (180-211)||(15430264-15430295)
chr4 (179-209)||(48415937-48415967)
chr4 (181-211)||(56198535-56198565)
chr4 (166-211)||(33926649-33926693)
chr4 (166-211)||(46955874-46955918)
chr4 (179-211)||(8448950-8448982)
chr4 (179-211)||(12782587-12782619)
chr4 (183-211)||(48014459-48014487)
[»] scaffold0250 (1 HSPs)
scaffold0250 (176-211)||(19078-19113)
[»] chr8 (11 HSPs)
chr8 (166-211)||(22174319-22174363)
chr8 (179-211)||(12582688-12582720)
chr8 (179-211)||(16953456-16953488)
chr8 (179-211)||(18824802-18824834)
chr8 (179-211)||(18826295-18826327)
chr8 (179-211)||(36711063-36711095)
chr8 (179-211)||(2560269-2560301)
chr8 (179-211)||(5614135-5614167)
chr8 (179-211)||(5980720-5980752)
chr8 (179-211)||(30784610-30784642)
chr8 (183-211)||(38248811-38248839)
[»] scaffold1684 (1 HSPs)
scaffold1684 (179-211)||(48-80)
[»] scaffold0757 (1 HSPs)
scaffold0757 (179-211)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (179-211)||(4196-4228)
[»] scaffold0045 (1 HSPs)
scaffold0045 (179-211)||(89452-89484)
[»] scaffold0024 (1 HSPs)
scaffold0024 (179-211)||(84923-84955)
[»] scaffold0002 (1 HSPs)
scaffold0002 (179-211)||(118854-118886)
[»] scaffold0520 (2 HSPs)
scaffold0520 (179-207)||(4387-4415)
scaffold0520 (179-207)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (179-211)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 8850454 - 8850620
Alignment:
Q  49 ttcatcatcatcttcatcaaatctataaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatt 148  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8850454 ttcatcatcatcttcatcaaatctataaatattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatgtt 8850553  T
Q  149 tcaaacaggttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacga 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8850554 tcaaacaggttacatcagattcatcttcaaacctaatctctaagagatttagctactcataatacga 8850620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 12988432 - 12988557
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 176  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| ||| | ||  |||||  ||| |||||||||| |||||||     
T  12988432 cattaagaaatattgaattgaataaaactagattgatattcacaat-aatagagcttcacagcaacatggttcaattagggttacatcagaatcatctc- 12988529  T
Q  177 aaacctaatctctaagagatttagctac 204  Q
    | ||||||||||||||||||||||||||    
T  12988530 agacctaatctctaagagatttagctac 12988557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 6512972 - 6512937
Alignment:
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  6512972 caaacctaatctctaagagatttagctactcataat 6512937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 31072033 - 31071989
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  31072033 gattcatctc-agacctaatctctaagagatttagctactcataat 31071989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 2378946 - 2378914
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  2378946 acctaatctctaagagatttagctactcataat 2378914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 3597189 - 3597221
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  3597189 acctaatctctaagagatttagctactcataat 3597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 11401973 - 11401941
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  11401973 acctaatctctaagagatttagctactcataat 11401941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 13004905 - 13004873
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  13004905 acctaatctctaagagatttagctactcataat 13004873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 26942842 - 26942874
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  26942842 acctaatctctaagagatttagctactcataat 26942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 28112172 - 28112204
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  28112172 acctaatctctaagagatttagctactcataat 28112204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 28665671 - 28665703
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  28665671 acctaatctctaagagatttagctactcataat 28665703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 30655160 - 30655128
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  30655160 acctaatctctaagagatttagctactcataat 30655128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 5259652 - 5259621
Alignment:
Q  180 cctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||||||||    
T  5259652 cctaatctctaagagatttagctactcataat 5259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 13021561 - 13021686
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| | | | ||  |||||  | |||||||||||| |||||| |    
T  13021561 cattaagaaatattgaattgaataaaactagattgatattcacaa-taatagagcttcacaacaacatggttcaattagggttacatcagaatcatct-c 13021658  T
Q  177 aaacctaatctctaagagatttagctac 204  Q
    | |||||  |||||||||||||||||||    
T  13021659 agacctatcctctaagagatttagctac 13021686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 2846016 - 2845986
Alignment:
Q  181 ctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||    
T  2846016 ctaatctctaagagatttagctactcataat 2845986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 11247478 - 11247448
Alignment:
Q  179 acctaatctctaagagatttagctactcata 209  Q
    |||||||||||||||||||||||||||||||    
T  11247478 acctaatctctaagagatttagctactcata 11247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 10289689 - 10289657
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||| ||||||||||    
T  10289689 acctaatctctaagagatttagttactcataat 10289657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 11126103 - 11126135
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  11126103 acctaatctctaagagatttagctacccataat 11126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 11188323 - 11188355
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||| ||||||||||||||||||||||||||||    
T  11188323 acctgatctctaagagatttagctactcataat 11188355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 22561571 - 22561603
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||| |||||||||||||||||||    
T  22561571 acctaatctctaaaagatttagctactcataat 22561603  T

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Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 27298756 - 27298890
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||||| | |||| |||||||||||| |    
T  27298756 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagagtttcacagccacatgtttcaaacatgattacttcagattcatct-c 27298854  T
Q  177 aaacctaatctctaagagatttagctactcataata 212  Q
    | ||||||||||||||| |||||||||||| |||||    
T  27298855 agacctaatctctaagacatttagctactcgtaata 27298890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 27308315 - 27308449
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||| |||| || |||| |||||||||||| |    
T  27308315 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagattttcatagccacatgttttaaacaagattacttcagattcatct-c 27308413  T
Q  177 aaacctaatctctaagagatttagctactcataata 212  Q
    | |||||||||||||||||||||||||| |||||||    
T  27308414 agacctaatctctaagagatttagctacacataata 27308449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 27308887 - 27309006
Alignment:
Q  93 aattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctccaaacctaatctctaa 191  Q
    |||||||||||| |||||| ||||||| |||||||||||||||| | ||| || |||||||| || |||| |||||||||||| || |||||||||||||    
T  27308887 aattgaataaaaatagattgatattcacaagcaatagagtttcacaaccaaatgtttcaaacaagattacttcagattcatct-cagacctaatctctaa 27308985  T
Q  192 gagatttagctactcataata 212  Q
    |||||||||||||||||||||    
T  27308986 gagatttagctactcataata 27309006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 11636733 - 11636608
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||  |||||||||||| ||| | ||  |||||  | |||||||||||| |||||| |    
T  11636733 cattaagaacaattgaattgaataaaactagattgatattcacaa-taatagagtttcacagcaacatggttcaattagggttacatcagaatcatct-c 11636636  T
Q  177 aaacctaatctctaagagatttagctac 204  Q
    | ||||||||||||||||||||||||||    
T  11636635 agacctaatctctaagagatttagctac 11636608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 18542452 - 18542318
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataa--gcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctc 175  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||   | |||||||||||| |   | |   |||||||||  ||||||| |||||||||    
T  18542452 cattaagaacaattgaattgaataaaactatattgatattcatatatgaaatagagtttcacattaacaaggttcaaacagagtacatcatattcatctc 18542353  T
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
     ||||||||||||||| |||||||||||||||||||    
T  18542352 -aaacctaatctctaaaagatttagctactcataat 18542318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 22360349 - 22360214
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 173  Q
    ||||||||| ||| ||||||||||||| || |||||| ||||||| ||| ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22360349 aaacattaagaacaattgaattgaatataaatagattgatattcacaagaaattgagtttcacatcaacatgtttaaattagggttaca-cataatcatc 22360251  T
Q  174 tccaaacctaatctctaagagatttagctactcataat 211  Q
    || | |||||||||||||||||||||||||||||||||    
T  22360250 tc-agacctaatctctaagagatttagctactcataat 22360214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 29344266 - 29344301
Alignment:
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344266 caaacctaatctctaagagatttagctactcataat 29344301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 45896281 - 45896148
Alignment:
Q  78 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 175  Q
    |||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| ||||  |||||  ||| |||||  ||| |||||||    
T  45896281 cattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaatatggttcaattagggttacaa-agaatcatctc 45896183  T
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
     | |||||||||||||||||||||||||||||||||    
T  45896182 -agacctaatctctaagagatttagctactcataat 45896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 22993989 - 22994124
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatc 173  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||| ||  |||||||||| | ||| | || ||| ||  | |||| || || | |||||    
T  22993989 aaacattaagaaaaattgaattgaataaaactagattgatattcacaataaatagagttttacagcaacatgtttaaattacggtttca-cataatcatc 22994087  T
Q  174 tccaaacctaatctctaagagatttagctactcataat 211  Q
    | || ||||||||||| |||||||||||||||||||||    
T  22994088 t-cagacctaatctctgagagatttagctactcataat 22994124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 27091694 - 27091661
Alignment:
Q  179 acctaatctctaagagatttagctactcataata 212  Q
    ||||||||||||||||||||||||||||||||||    
T  27091694 acctaatctctaagagatttagctactcataata 27091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 2873364 - 2873332
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  2873364 acctaatctctaagagatttagctactcataat 2873332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 3840316 - 3840284
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  3840316 acctaatctctaagagatttagctactcataat 3840284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 7486370 - 7486338
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  7486370 acctaatctctaagagatttagctactcataat 7486338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 11190326 - 11190294
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  11190326 acctaatctctaagagatttagctactcataat 11190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 20729041 - 20729073
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  20729041 acctaatctctaagagatttagctactcataat 20729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 24125299 - 24125267
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  24125299 acctaatctctaagagatttagctactcataat 24125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 24128576 - 24128544
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  24128576 acctaatctctaagagatttagctactcataat 24128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 25584487 - 25584455
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  25584487 acctaatctctaagagatttagctactcataat 25584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 30690535 - 30690503
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  30690535 acctaatctctaagagatttagctactcataat 30690503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 32287718 - 32287750
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  32287718 acctaatctctaagagatttagctactcataat 32287750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 35751254 - 35751222
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  35751254 acctaatctctaagagatttagctactcataat 35751222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 41976815 - 41976783
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  41976815 acctaatctctaagagatttagctactcataat 41976783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 43926635 - 43926603
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  43926635 acctaatctctaagagatttagctactcataat 43926603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 47051295 - 47051263
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  47051295 acctaatctctaagagatttagctactcataat 47051263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 47054725 - 47054693
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  47054725 acctaatctctaagagatttagctactcataat 47054693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 50461943 - 50461975
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  50461943 acctaatctctaagagatttagctactcataat 50461975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 54723541 - 54723509
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  54723541 acctaatctctaagagatttagctactcataat 54723509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 54834164 - 54834200
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||| |||||||||||||||||||||||    
T  54834164 tctttttcatcattatcttcatcaaatctataaacat 54834200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 33389408 - 33389438
Alignment:
Q  50 tcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||    
T  33389408 tcatcatcatcttcatcaaatctataaacat 33389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 22370252 - 22370117
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 173  Q
    ||||||||| ||| ||||||||||||| || |||||| |||||||  || ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22370252 aaacattaagaacaattgaattgaatataaatagattgatattcacgagaaattgagtttcacaacaacatgtttaaattagggttaca-cataatcatc 22370154  T
Q  174 tccaaacctaatctctaagagatttagctactcataat 211  Q
    || | |||||||||||||||||||| ||||||||||||    
T  22370153 tc-agacctaatctctaagagattttgctactcataat 22370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 282495 - 282555
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatattt 149  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||||||||  |||| ||||||    
T  282495 attgaattgaataaaactagatttataattataatcaattgagtttcacggccacatattt 282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 17040416 - 17040448
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||| |||||||||||    
T  17040416 acctaatctctaagagatttaactactcataat 17040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 19301899 - 19301931
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||| |||||||||||||||    
T  19301899 acctaatctctaagagagttagctactcataat 19301931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 19305083 - 19305115
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||| |||||||||||||||    
T  19305083 acctaatctctaagagagttagctactcataat 19305115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 22783392 - 22783360
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||| |||||    
T  22783392 acctaatctctaagagatttagctacttataat 22783360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 22787756 - 22787724
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||| |||||    
T  22787756 acctaatctctaagagatttagctacttataat 22787724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 28008464 - 28008496
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||| ||||||||||||||||||||||||||    
T  28008464 acctaaactctaagagatttagctactcataat 28008496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 30220403 - 30220435
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||| |||||||||||||||||||||||||    
T  30220403 acctaatatctaagagatttagctactcataat 30220435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 52309952 - 52309984
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||| |||||||||||||||||||||||||    
T  52309952 acctaatatctaagagatttagctactcataat 52309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 31514 - 31395
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 187  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | ||||||||||||||||| || |||||||||    
T  31514 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatct-cagacctaatct 31416  T
Q  188 ctaagagatttagctactcat 208  Q
    |||||||||||| ||||||||    
T  31415 ctaagagatttaactactcat 31395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 37907563 - 37907682
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 187  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | ||||||||||||||||| || |||||||||    
T  37907563 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatct-cagacctaatct 37907661  T
Q  188 ctaagagatttagctactcat 208  Q
    |||||||||||| ||||||||    
T  37907662 ctaagagatttaactactcat 37907682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 7635451 - 7635329
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 187  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| | | | || ||| ||  | |||||||||||| |||||| || |||||||||    
T  7635451 attgaattgaataaaactagattgatattcataagaaatagagtttcacatcaacatgtttaaattagggttacatcagaatcatct-cacacctaatct 7635353  T
Q  188 ctaagagatttagctactcataat 211  Q
    |||||||||||| |||||||||||    
T  7635352 ctaagagatttaactactcataat 7635329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 27332077 - 27332210
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| | || ||| ||  | |||||||||||| |||| | |    
T  27332077 cattaataacaattgaattgaataaaactagattgatattcacaagaaataaagtttcatagcaacatgtttaaattagggttacatcagaatcat-ttc 27332175  T
Q  177 aaacctaatctctaagagatttagctactcataat 211  Q
    | ||||||||| |||||||||||||||||||||||    
T  27332176 agacctaatctttaagagatttagctactcataat 27332210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 34066758 - 34066880
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 187  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||| | | | || ||| ||  | |||||||||| | |||||| || |||||||||    
T  34066758 attgaattgaataaaactagattgatattcacaagaaatagagtttcacaacaacatgtttaaattagggttacatcaaaatcatct-catacctaatct 34066856  T
Q  188 ctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||    
T  34066857 ctaagagatttagctactcataat 34066880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 34732667 - 34732798
Alignment:
Q  79 attaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctcca 177  Q
    ||||| ||| |||||||||||||||| ||||||||  ||||| ||   ||||||||||| ||| | |||||||||   ||||||| |||| ||||||| |    
T  34732667 attaagaacaattgaattgaataaaaactagattatcattcacaatagatagagtttcacagcaacatatttcaatagggttaca-cagaatcatctc-a 34732764  T
Q  178 aacctaatctctaagagatttagctactcataat 211  Q
      |||||||||||| |||||||||||||||||||    
T  34732765 ggcctaatctctaatagatttagctactcataat 34732798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 31697347 - 31697383
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  31697347 tctttttcatcatcatcttcatcaaatctataaacat 31697383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 50124425 - 50124389
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  50124425 tctttttcatcatcatcttcatcaaatctataaacat 50124389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 6071348 - 6071393
Alignment:
Q  165 agattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  6071348 agattcatctc-agacctaatctctaagagatttagctactcataat 6071393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 20398569 - 20398537
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  20398569 acctaatctctaagagatttagctactcataat 20398537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 21018873 - 21018905
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  21018873 acctaatctctaagagatttagctactcataat 21018905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 23022331 - 23022363
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  23022331 acctaatctctaagagatttagctactcataat 23022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 27536693 - 27536725
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  27536693 acctaatctctaagagatttagctactcataat 27536725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 28110773 - 28110741
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  28110773 acctaatctctaagagatttagctactcataat 28110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 31204554 - 31204522
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  31204554 acctaatctctaagagatttagctactcataat 31204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 37184271 - 37184303
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  37184271 acctaatctctaagagatttagctactcataat 37184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 41058709 - 41058741
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  41058709 acctaatctctaagagatttagctactcataat 41058741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 45961152 - 45961184
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  45961152 acctaatctctaagagatttagctactcataat 45961184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 50123939 - 50123970
Alignment:
Q  49 ttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||||||||||||||||    
T  50123939 ttcatcatcatcttcatcaaatctataaacat 50123970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 24509280 - 24509250
Alignment:
Q  50 tcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||    
T  24509280 tcatcatcatcttcatcaaatctataaacat 24509250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 45941132 - 45941102
Alignment:
Q  179 acctaatctctaagagatttagctactcata 209  Q
    |||||||||||||||||||||||||||||||    
T  45941132 acctaatctctaagagatttagctactcata 45941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 52750389 - 52750419
Alignment:
Q  50 tcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||    
T  52750389 tcatcatcatcttcatcaaatctataaacat 52750419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 11668433 - 11668465
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  11668433 acctaatctctaagagatttagctacacataat 11668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 563530 - 563661
Alignment:
Q  79 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaa 178  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||| | |||||||||||||| | ||| || ||||||||||  ||||||||| || |||||||    
T  563530 attaagaacaattaaattgaataaaactatattaatattcacatgcaatagagtttcacaaccacatgtttcaaacagtctacatcagaatcgtctccaa 563629  T
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||| || ||||||| ||||||||||    
T  563630 acctaatctct-agtgatttagatactcataat 563661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 18765947 - 18766044
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatct 174  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||| ||||| || ||||||| ||| |||| ||||||||||||    
T  18765947 cattaaaaacaattgaattgaataaaactagattaatatgcacaagcaataaagtttcacagccacatgtttcaaataggattacctcagattcatct 18766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 21914937 - 21914818
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| || |||| ||  |||||||||||||||| | ||  |||||  | |||||||||||| |||||| |    
T  21914937 cattaagaacaattgaattgaataaaactagattgattttcacaa-taatagagtttcatagcaacatggttcaattagggttacatcagaatcatct-c 21914840  T
Q  177 aaacctaatctctaagagattt 198  Q
    | ||||||||||||||||||||    
T  21914839 agacctaatctctaagagattt 21914818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 13824467 - 13824428
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacattaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13824467 tctttttcatcatcatcttcatcaaatctataaacattaa 13824428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 24041971 - 24042010
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacattaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24041971 tctttttcatcatcatcttcatcaaatctataaacattaa 24042010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 31575222 - 31575100
Alignment:
Q  89 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 187  Q
    |||||||| |||||||||||||| ||||||| | | |||||||||||| | | | ||  |||||| | ||||||||||||||||||| || ||||| |||    
T  31575222 attgaattaaataaaactagattgatattcacatgaaatagagtttcacaacaacatggttcaaatagggttacatcagattcatct-cagacctactct 31575124  T
Q  188 ctaagagatttagctactcataat 211  Q
     ||||||||||| | |||||||||    
T  31575123 ttaagagatttaacaactcataat 31575100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 38385102 - 38385138
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  38385102 tctttttcatcatcatcttcatcaaatctataaacat 38385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 41877071 - 41877204
Alignment:
Q  78 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 175  Q
    |||||||||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| |||||||    
T  41877071 cattaaaaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatggttcaattagggttacaa-agaatcatctc 41877169  T
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
     | |||||||||||||||||||||||||||||||||    
T  41877170 -agacctaatctctaagagatttagctactcataat 41877204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 7270731 - 7270699
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  7270731 acctaatctctaagagatttagctactcataat 7270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 7624817 - 7624785
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  7624817 acctaatctctaagagatttagctactcataat 7624785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 14016546 - 14016578
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  14016546 acctaatctctaagagatttagctactcataat 14016578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 17664267 - 17664235
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  17664267 acctaatctctaagagatttagctactcataat 17664235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 18952408 - 18952376
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  18952408 acctaatctctaagagatttagctactcataat 18952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 20055489 - 20055457
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  20055489 acctaatctctaagagatttagctactcataat 20055457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 22129980 - 22129948
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  22129980 acctaatctctaagagatttagctactcataat 22129948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 26753109 - 26753141
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  26753109 acctaatctctaagagatttagctactcataat 26753141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 26896011 - 26896043
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  26896011 acctaatctctaagagatttagctactcataat 26896043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 30066057 - 30066025
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  30066057 acctaatctctaagagatttagctactcataat 30066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 33551836 - 33551804
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  33551836 acctaatctctaagagatttagctactcataat 33551804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 34831478 - 34831446
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  34831478 acctaatctctaagagatttagctactcataat 34831446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 41306934 - 41306966
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  41306934 acctaatctctaagagatttagctactcataat 41306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 18239900 - 18239935
Alignment:
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||| |||||||||||    
T  18239900 caaacctaatctctaagagatttaactactcataat 18239935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 38385622 - 38385592
Alignment:
Q  50 tcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||||||||||||||||||||||||    
T  38385622 tcatcatcatcttcatcaaatctataaacat 38385592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 4099929 - 4099961
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||| |||||||||||    
T  4099929 acctaatctctaagagatttatctactcataat 4099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 18032173 - 18032141
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||| |||||||    
T  18032173 acctaatctctaagagatttagctattcataat 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 9753 - 9620
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||| | || ||| ||  | || ||||||||| |||||| |    
T  9753 cattaagaacaattgaattgaataaaactatattgatattcataagaaatagagtttcacagcaacatgtttaaattagggatacatcagaatcatct-c 9655  T
Q  177 aaacctaatctctaagagatttagctactcataat 211  Q
    | ||||||| |||||||||||||||||||||||||    
T  9654 agacctaatatctaagagatttagctactcataat 9620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 48709 - 48842
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctcc 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| | | ||||||||| || |   | || | |||| ||| || ||||||||||||||||     
T  48709 cattaagaacaattgaattgaataaaactagattgatattcacatgaaatagagttgcacattaacatgtctcaaccagagtaacatcagattcatctc- 48807  T
Q  177 aaacctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||| |||||||||    
T  48808 aaacctaatctctaagagatttagccactcataat 48842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 35521671 - 35521806
Alignment:
Q  77 acattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctc 175  Q
    ||||||| ||| |||||||||| |||||||||||| |||  || | | |||||||||||| | | | ||  ||||||||  |||||||||||||||||||    
T  35521671 acattaagaacaattgaattgagtaaaactagattgatacccacatgaaatagagtttcacaacaacatggttcaaacaaagttacatcagattcatctc 35521770  T
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
      |||||||||| ||| |||||||||||||||||||    
T  35521771 ataacctaatctttaatagatttagctactcataat 35521806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 8892882 - 8892843
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacattaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8892882 tctttttcatcatcatcttcatcaaatctataaacattaa 8892843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 22630627 - 22630507
Alignment:
Q  90 ttgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaaacctaatctc 188  Q
    ||||||||||||||| ||||||||  ||||| ||  |||||||||||| ||| | || ||||||  ||||||||| ||| ||||||| | |||||| |||    
T  22630627 ttgaattgaataaaaactagattatcattcacaataaatagagtttcacagcaacatgtttcaattaggttacat-agaatcatctc-agacctaacctc 22630530  T
Q  189 taagagatttagctactcataat 211  Q
    ||| |||||||||||||||||||    
T  22630529 taatagatttagctactcataat 22630507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 12602415 - 12602376
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacattaa 83  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  12602415 tctttttcatcattatcttcatcaaatctataaacattaa 12602376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 31427938 - 31427982
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  31427938 gattcatctc-agacctaatctctaagagatttagctactcataat 31427982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 8888332 - 8888300
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  8888332 acctaatctctaagagatttagctactcataat 8888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 9185832 - 9185864
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  9185832 acctaatctctaagagatttagctactcataat 9185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 9189061 - 9189093
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  9189061 acctaatctctaagagatttagctactcataat 9189093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 9966712 - 9966744
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  9966712 acctaatctctaagagatttagctactcataat 9966744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 10708363 - 10708399
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10708363 tctttttcatcataatcttcatcaaatctataaacat 10708399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 11348304 - 11348336
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  11348304 acctaatctctaagagatttagctactcataat 11348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 13972302 - 13972334
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  13972302 acctaatctctaagagatttagctactcataat 13972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 22020765 - 22020733
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  22020765 acctaatctctaagagatttagctactcataat 22020733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 25960097 - 25960129
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  25960097 acctaatctctaagagatttagctactcataat 25960129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 27266485 - 27266453
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  27266485 acctaatctctaagagatttagctactcataat 27266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 30190033 - 30190001
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  30190033 acctaatctctaagagatttagctactcataat 30190001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 33310363 - 33310331
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  33310363 acctaatctctaagagatttagctactcataat 33310331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 38015215 - 38015183
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  38015215 acctaatctctaagagatttagctactcataat 38015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 40781169 - 40781137
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  40781169 acctaatctctaagagatttagctactcataat 40781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 42369119 - 42369151
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  42369119 acctaatctctaagagatttagctactcataat 42369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 43723398 - 43723366
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  43723398 acctaatctctaagagatttagctactcataat 43723366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 45453571 - 45453539
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  45453571 acctaatctctaagagatttagctactcataat 45453539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 45456858 - 45456826
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  45456858 acctaatctctaagagatttagctactcataat 45456826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 5105423 - 5105393
Alignment:
Q  179 acctaatctctaagagatttagctactcata 209  Q
    |||||||||||||||||||||||||||||||    
T  5105423 acctaatctctaagagatttagctactcata 5105393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 24234789 - 24234759
Alignment:
Q  182 taatctctaagagatttagctactcataata 212  Q
    |||||||||||||||||||||||||||||||    
T  24234789 taatctctaagagatttagctactcataata 24234759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 43208298 - 43208328
Alignment:
Q  179 acctaatctctaagagatttagctactcata 209  Q
    |||||||||||||||||||||||||||||||    
T  43208298 acctaatctctaagagatttagctactcata 43208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 24238064 - 24238031
Alignment:
Q  179 acctaatctctaagagatttagctactcataata 212  Q
    ||||||||||||| ||||||||||||||||||||    
T  24238064 acctaatctctaaaagatttagctactcataata 24238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 37280089 - 37280117
Alignment:
Q  183 aatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||    
T  37280089 aatctctaagagatttagctactcataat 37280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 24917998 - 24917888
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcc 176  Q
    |||||| ||| |||| |||||||||||||| ||||||||||| | |||||||||||||| ||| | |||||||||||| || |||||  || ||||||||    
T  24917998 cattaagaacaattggattgaataaaactaaattaatattcacatgcaatagagtttcacagcgacatatttcaaacaagtctacatacgaatcatctcc 24917899  T
Q  177 aaacctaatct 187  Q
    | |||||||||    
T  24917898 agacctaatct 24917888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 7227330 - 7227197
Alignment:
Q  78 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 175  Q
    |||||| ||| |||||||||||||||| ||| |||   ||||| ||  |||||||||||||||| | || ||||||  ||| ||||| |||| ||||||     
T  7227330 cattaagaacaattgaattgaataaaaactaaattgtcattcacaataaatagagtttcatagcaacatgtttcaattagggttaca-cagaatcatctt 7227232  T
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
     | |||||||||||||||||||||||||||||||||    
T  7227231 -agacctaatctctaagagatttagctactcataat 7227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 18562923 - 18562977
Alignment:
Q  156 ggttacatcagattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  18562923 ggttacatcagaatcatctc-agacctaatctctaagagatttagctacttataat 18562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 6603172 - 6603128
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  6603172 gattcatctc-agacctaatctctaagagatttagctactcataat 6603128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 9405959 - 9405927
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  9405959 acctaatctctaagagatttagctactcataat 9405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 9865139 - 9865171
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  9865139 acctaatctctaagagatttagctactcataat 9865171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 11398438 - 11398470
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  11398438 acctaatctctaagagatttagctactcataat 11398470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 14682818 - 14682782
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14682818 tctttttcatcattatcttcatcaaatctataaacat 14682782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 14683856 - 14683888
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  14683856 acctaatctctaagagatttagctactcataat 14683888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 17730516 - 17730484
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  17730516 acctaatctctaagagatttagctactcataat 17730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 30474991 - 30474955
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||| |||||||||||||||||    
T  30474991 tctttttcatcatcatctttatcaaatctataaacat 30474955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 30474514 - 30474545
Alignment:
Q  49 ttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||||||||||||||||    
T  30474514 ttcatcatcatcttcatcaaatctataaacat 30474545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 14682127 - 14682161
Alignment:
Q  46 tttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||| |||||||||||||||||||||||    
T  14682127 tttttcatcattatcttcatcaaatctataaacat 14682161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 16956160 - 16956194
Alignment:
Q  46 tttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||| |||||||||||||||||||||||    
T  16956160 tttttcatcattatcttcatcaaatctataaacat 16956194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 2090408 - 2090296
Alignment:
Q  79 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcca 177  Q
    ||||| ||| |||||||||||||| |||||||||||| || ||  | ||||||||||| | ||| ||||||||||| ||  |||||||   |||||||||    
T  2090408 attaagaacaattgaattgaataagactagattaataatcttatac-atagagtttcacaaccacatatttcaaacaagcctacatcaagatcatctcca 2090310  T
Q  178 aacctaatctctaa 191  Q
     || ||||||||||    
T  2090309 gacgtaatctctaa 2090296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 16165462 - 16165418
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||    
T  16165462 gattcatctc-agacctaatctctaagagatttaactactcataat 16165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 25443234 - 25443267
Alignment:
Q  47 ttttcatcatcatcttcatcaaatctataaacat 80  Q
    |||||||||| |||||||||||||||||||||||    
T  25443234 ttttcatcataatcttcatcaaatctataaacat 25443267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 48645188 - 48645144
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||    
T  48645188 gattcatctc-agacctaatctctaagagatttagctacgcataat 48645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 4596421 - 4596453
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  4596421 acctaatctctaagagatttagctacacataat 4596453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 4695226 - 4695194
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||| |||||||||||||||||||    
T  4695226 acctaatctctaaaagatttagctactcataat 4695194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 17238459 - 17238427
Alignment:
Q  48 tttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||| |||||||||||||||    
T  17238459 tttcatcatcatcttcagcaaatctataaacat 17238427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 23225318 - 23225350
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||| |||||||||||    
T  23225318 acctaatctctaagagatttaactactcataat 23225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 23234471 - 23234503
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||| |||||||||||    
T  23234471 acctaatctctaagagatttaactactcataat 23234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 34018085 - 34018220
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatc 173  Q
    ||||||||| ||| |||||||||||||||| ||||| |   ||||| ||  |||||||||||| ||| | ||  |||||  ||||||||  ||| |||||    
T  34018085 aaacattaagaacaattgaattgaataaaaactagactgtcattcacaataaatagagtttcacagcaacatggttcaattaggttacaa-agaatcatc 34018183  T
Q  174 tccaaacctaatctctaagagatttagctactcataat 211  Q
    || | |||||||||||||||||||||||||||||||||    
T  34018184 tc-agacctaatctctaagagatttagctactcataat 34018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 27691447 - 27691583
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcat 172  Q
    ||||||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| ||||    
T  27691447 aaacattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatgattcaattagggttacaa-agaatcat 27691545  T
Q  173 ctccaaacctaatctctaagagatttagctactcataat 211  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  27691546 ctc-agacctaatctctaagagatttagctactcataat 27691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 37740069 - 37740126
Alignment:
Q  78 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 136  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  37740069 cattaacaacaattgaattgaataaaactagattaatattcacaa-taatagagtttca 37740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 33493998 - 33494059
Alignment:
Q  75 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 136  Q
    ||||||||| ||| |||||||| |||||||||| ||| ||||||||| | ||||||||||||    
T  33493998 aaacattaacaacaattgaattaaataaaactaaattgatattcatatgaaatagagtttca 33494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 34320313 - 34320357
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  34320313 gattcatctc-agacctaatctctaagagatttagctactcataat 34320357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 44183642 - 44183609
Alignment:
Q  47 ttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||||||||||||||||||    
T  44183642 ttttcatcatcatcttcatcaaatctataaacat 44183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 44809351 - 44809395
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  44809351 gattcatctc-agacctaatctctaagagatttagctactcataat 44809395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 50282754 - 50282721
Alignment:
Q  47 ttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||||||||||||||||||    
T  50282754 ttttcatcatcatcttcatcaaatctataaacat 50282721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 15163906 - 15163874
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  15163906 acctaatctctaagagatttagctactcataat 15163874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 15405492 - 15405524
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  15405492 acctaatctctaagagatttagctactcataat 15405524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 15436877 - 15436909
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  15436877 acctaatctctaagagatttagctactcataat 15436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 19820442 - 19820410
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  19820442 acctaatctctaagagatttagctactcataat 19820410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 19827204 - 19827172
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  19827204 acctaatctctaagagatttagctactcataat 19827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 24150386 - 24150354
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  24150386 acctaatctctaagagatttagctactcataat 24150354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 27677462 - 27677494
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  27677462 acctaatctctaagagatttagctactcataat 27677494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 29324539 - 29324507
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  29324539 acctaatctctaagagatttagctactcataat 29324507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 38283896 - 38283928
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  38283896 acctaatctctaagagatttagctactcataat 38283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 39501362 - 39501330
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  39501362 acctaatctctaagagatttagctactcataat 39501330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 40903491 - 40903523
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  40903491 acctaatctctaagagatttagctactcataat 40903523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 44164497 - 44164465
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  44164497 acctaatctctaagagatttagctactcataat 44164465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 45044604 - 45044640
Alignment:
Q  44 tctttttcatcatcatcttcatcaaatctataaacat 80  Q
    ||||||||||||||||||||||||||| |||||||||    
T  45044604 tctttttcatcatcatcttcatcaaatatataaacat 45044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 48637219 - 48637187
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  48637219 acctaatctctaagagatttagctactcataat 48637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 52006938 - 52006970
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  52006938 acctaatctctaagagatttagctactcataat 52006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 52531343 - 52531375
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  52531343 acctaatctctaagagatttagctactcataat 52531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 53094221 - 53094189
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  53094221 acctaatctctaagagatttagctactcataat 53094189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 56195241 - 56195209
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  56195241 acctaatctctaagagatttagctactcataat 56195209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 8877909 - 8877940
Alignment:
Q  179 acctaatctctaagagatttagctactcataa 210  Q
    ||||||||||||||||||||||||||||||||    
T  8877909 acctaatctctaagagatttagctactcataa 8877940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 15430264 - 15430295
Alignment:
Q  180 cctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||||||||    
T  15430264 cctaatctctaagagatttagctactcataat 15430295  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 48415937 - 48415967
Alignment:
Q  179 acctaatctctaagagatttagctactcata 209  Q
    |||||||||||||||||||||||||||||||    
T  48415937 acctaatctctaagagatttagctactcata 48415967  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 56198565 - 56198535
Alignment:
Q  181 ctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||    
T  56198565 ctaatctctaagagatttagctactcataat 56198535  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 33926693 - 33926649
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||| ||||||||||    
T  33926693 gattcatctc-agacctaatctctaagagatttagttactcataat 33926649  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 46955874 - 46955918
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||    
T  46955874 gattcatctc-agacctaatctttaagagatttagctactcataat 46955918  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 8448950 - 8448982
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||| ||||||||||    
T  8448950 acctaatctctaagagatttagttactcataat 8448982  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 12782619 - 12782587
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||| ||||||||||||||||||||||||||    
T  12782619 acctaacctctaagagatttagctactcataat 12782587  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 48014459 - 48014487
Alignment:
Q  183 aatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||    
T  48014459 aatctctaagagatttagctactcataat 48014487  T

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Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 19113 - 19078
Alignment:
Q  176 caaacctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  19113 caaacctaatctctaagagatttagctactcataat 19078  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 22174319 - 22174363
Alignment:
Q  166 gattcatctccaaacctaatctctaagagatttagctactcataat 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  22174319 gattcatctc-agacctaatctctaagagatttagctactcataat 22174363  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 12582720 - 12582688
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  12582720 acctaatctctaagagatttagctactcataat 12582688  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 16953488 - 16953456
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  16953488 acctaatctctaagagatttagctactcataat 16953456  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 18824802 - 18824834
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  18824802 acctaatctctaagagatttagctactcataat 18824834  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 18826295 - 18826327
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  18826295 acctaatctctaagagatttagctactcataat 18826327  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 36711063 - 36711095
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  36711063 acctaatctctaagagatttagctactcataat 36711095  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 2560301 - 2560269
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||| ||||||||||||||||||||||||||    
T  2560301 acctaacctctaagagatttagctactcataat 2560269  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 5614135 - 5614167
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||||||||||||||||||||||| |||||    
T  5614135 acctaatctctaagagatttagctacttataat 5614167  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 5980720 - 5980752
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||| ||||||||||||||||||||||||    
T  5980720 acctaatccctaagagatttagctactcataat 5980752  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 30784642 - 30784610
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||| ||||||||||||||||||||||||||    
T  30784642 acctaacctctaagagatttagctactcataat 30784610  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 38248811 - 38248839
Alignment:
Q  183 aatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||    
T  38248811 aatctctaagagatttagctactcataat 38248839  T

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Target: scaffold1684 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 48 - 80
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  48 acctaatctctaagagatttagctactcataat 80  T

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Target: scaffold0757 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 5067 - 5035
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  5067 acctaatctctaagagatttagctactcataat 5035  T

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Target: scaffold0427 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 4196 - 4228
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  4196 acctaatctctaagagatttagctactcataat 4228  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 89484 - 89452
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  89484 acctaatctctaagagatttagctactcataat 89452  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 84955 - 84923
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  84955 acctaatctctaagagatttagctactcataat 84923  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 118854 - 118886
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    |||||||||||||||||||||||||||||||||    
T  118854 acctaatctctaagagatttagctactcataat 118886  T

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Target: scaffold0520 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 4387 - 4415
Alignment:
Q  179 acctaatctctaagagatttagctactca 207  Q
    |||||||||||||||||||||||||||||    
T  4387 acctaatctctaagagatttagctactca 4415  T

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Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 8626 - 8654
Alignment:
Q  179 acctaatctctaagagatttagctactca 207  Q
    |||||||||||||||||||||||||||||    
T  8626 acctaatctctaagagatttagctactca 8654  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 82 - 114
Alignment:
Q  179 acctaatctctaagagatttagctactcataat 211  Q
    ||||||| |||||||||||||||||||||||||    
T  82 acctaatttctaagagatttagctactcataat 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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