View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15264_low_3 (Length: 512)

Name: NF15264_low_3
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15264_low_3
NF15264_low_3
[»] chr3 (2 HSPs)
chr3 (1-500)||(6056738-6057240)
chr3 (1-91)||(3519432-3519522)
[»] chr8 (2 HSPs)
chr8 (1-114)||(13446456-13446573)
chr8 (1-107)||(7504035-7504142)
[»] chr5 (2 HSPs)
chr5 (1-92)||(15521242-15521334)
chr5 (1-48)||(14570361-14570408)
[»] chr7 (1 HSPs)
chr7 (1-46)||(27035276-27035321)
[»] chr4 (1 HSPs)
chr4 (1-45)||(32007859-32007903)
[»] chr6 (1 HSPs)
chr6 (1-48)||(10121064-10121111)
[»] chr1 (1 HSPs)
chr1 (2-48)||(45059352-45059398)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 6056738 - 6057240
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnn-caattctttttaaatgaacattgtcaagtatgtaaccgg-cct 98  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||           |||||| ||| ||||||| ||||||||||  ||| |||| |||    
T  6056738 atatatttaactacaatttaattgtctatcactataaatagtgttgattttttttttcaattcatttaaaatgaaaattgtcaagtccgtagccgggcct 6056837  T
Q  99 ccaaattgttggaaacaaccttggttaaaaacaaaatt-aattaattataatgtttggacacgtgattaattaattatcatgtatttctattcatattac 197  Q
    |||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6056838 ccaaattgttggaaacaaccttggttaaattttttttttaattaattataatgtttggacacgtgattaattaattatcatgtatttctattcatattac 6056937  T
Q  198 catatttatgtttataatcaacaatgaacagactaagtactctcttaggtttgttgaatacaaaaccaagttaaatgtacttacaatttttgttgaagac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6056938 catatttatgtttataatcaacaatgaacagactaagtactctcttaggtttgttgaatacaaaaccaagttaaatgtacttacaatttttgttgaagac 6057037  T
Q  298 aaaacaaaaaggaattatgaacaaatcattaactaaaagtatgaatctctttactttcaaactaggctaaataaactacactcaaataatagtttttatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057038 aaaacaaaaaggaattatgaacaaatcattaactaaaagtatgaatctctttactttcaaactaggctaaataaactacactcaaataatagtttttatt 6057137  T
Q  398 ttgcaagataatgaagtaatcaagactgcaagagcataacaattaccggttgacaatagtagttcatgaaatccttttatgatcaacatcaatgtccctt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057138 ttgcaagataatgaagtaatcaagactgcaagagcataacaattaccagttgacaatagtagttcatgaaatccttttatgatcaacatcaatgtccctt 6057237  T
Q  498 atg 500  Q
    |||    
T  6057238 atg 6057240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3519432 - 3519522
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnncaattctttttaaatgaacattgtcaagtatgtaa 91  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||          |||||||||||||||||| ||| |||||| |||||    
T  3519432 atatattgaactacaacttaattgtctatcactataaatagtgttgatttttttttcaattctttttaaatgaaaattatcaagtctgtaa 3519522  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13446456 - 13446573
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnnc----aattctttttaaatgaacattgtcaagtatgtaaccggc 96  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||        |    ||||||||||||| ||| |||||||||| ||||||||||    
T  13446456 atatatttaactacaatttaattgtctatcactgtaaatagtgttggattttttttctttcaattctttttaaacgaaaattgtcaagtctgtaaccggc 13446555  T
Q  97 ctccaaattgttggaaac 114  Q
    ||||||||||| ||||||    
T  13446556 ctccaaattgtcggaaac 13446573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 7504035 - 7504142
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnncaattctttttaaatgaacattgtcaagtatgtaacc-ggcctc 99  Q
    |||||||||||||||| |||||||| | |||| |||||||||||||||        ||||| |||||||||||| |||||||||| ||||||| ||||||    
T  7504035 atatatttaactacaacttaattgtctgtcaccataaatagtgttggattttttttcaattatttttaaatgaaaattgtcaagtctgtaaccgggcctc 7504134  T
Q  100 caaattgt 107  Q
    | ||||||    
T  7504135 cgaattgt 7504142  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 15521242 - 15521334
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttgga-nnnnnnnncaattctttttaaatgaacattgtcaagtatgtaac 92  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||||         |||||||||||||||||| |||||||||| ||||||    
T  15521242 atatatttaactacaatttaattgtctattactataaacagtgttggattttttttacaattctttttaaatgaaaattgtcaagtctgtaac 15521334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14570361 - 14570408
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttgga 48  Q
    ||||||| |||||||| |||||||||| |||| |||||||||||||||    
T  14570361 atatattgaactacaacttaattgtttgtcaccataaatagtgttgga 14570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27035276 - 27035321
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttg 46  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||    
T  27035276 atatatttaactacaacttaattgtctatcactataaatagtgttg 27035321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32007903 - 32007859
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgtt 45  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||    
T  32007903 atatatttaactacaatttaattgtctatcactataaacagtgtt 32007859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10121111 - 10121064
Alignment:
Q  1 atatatttaactacaatttaattgtttatcacaataaatagtgttgga 48  Q
    |||||||||||||||| |||||||| | |||| |||||||||||||||    
T  10121111 atatatttaactacaacttaattgtctgtcaccataaatagtgttgga 10121064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 45059398 - 45059352
Alignment:
Q  2 tatatttaactacaatttaattgtttatcacaataaatagtgttgga 48  Q
    ||||||||||||||| |||||||| |||||| ||||||| |||||||    
T  45059398 tatatttaactacaacttaattgtctatcactataaataatgttgga 45059352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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