View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15264_low_5 (Length: 389)
Name: NF15264_low_5
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15264_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 47414964 - 47415335
Alignment:
| Q |
1 |
atgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaat |
100 |
Q |
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| T |
47414964 |
atgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatgatgagcacggagtggattaacaat |
47415063 |
T |
|
| Q |
101 |
ggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggttcatatctcttc |
200 |
Q |
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| T |
47415064 |
ggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggttcatatctcttc |
47415163 |
T |
|
| Q |
201 |
tattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggagaatgatgttgcttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47415164 |
tattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggagaatgatgttgcttgtc |
47415263 |
T |
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| Q |
301 |
ttgtggcagaggagagatgctgcggcagctctggtgagggcgaggggatggagaatggcgttccatgattat |
372 |
Q |
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| T |
47415264 |
ttgtggcagaggagagatgctgcggcggctctggtgagggcgaggggatggagaatggcgttccatgattat |
47415335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 47398342 - 47398502
Alignment:
| Q |
23 |
aggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattctttt |
122 |
Q |
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| T |
47398342 |
aggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttagcacggtgtgtagcgtcaaaggcgaaaacacaacattctttt |
47398441 |
T |
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| Q |
123 |
ctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtc |
183 |
Q |
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|||||| | ||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
47398442 |
ctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttggttaggtc |
47398502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 46543179 - 46543041
Alignment:
| Q |
44 |
tgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggaga |
143 |
Q |
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| T |
46543179 |
tgtgtgggaccctcagcgccggccgcaattatgctgagcacaacgtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggaga |
46543080 |
T |
|
| Q |
144 |
gcaaatggttggccatggtcatggaaaccttgattaggt |
182 |
Q |
| |
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|||||| ||||| ||||||| |||| |||| |||||| |
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| T |
46543079 |
acaaatgtttggcgatggtcacagaaaacttgtttaggt |
46543041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 5155355 - 5155299
Alignment:
| Q |
22 |
gaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgct |
78 |
Q |
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| T |
5155355 |
gaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgct |
5155299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 18428572 - 18428637
Alignment:
| Q |
292 |
ttgcttgtcttgtggcagaggagagatgctgcggcagctctggtgagggcgaggggatggagaatg |
357 |
Q |
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|||||||||| | ||| |||| |||||||||||| |||| ||||| |||||| |||||||||||| |
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| T |
18428572 |
ttgcttgtctcgcggcggaggtgagatgctgcggtggctccggtgacggcgagtggatggagaatg |
18428637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 21465975 - 21466126
Alignment:
| Q |
31 |
gagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagt |
130 |
Q |
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|||||| | ||| ||||| ||||| ||||||||||| || |||||||| | ||| ||||| | | |||||||||||||||||||| ||||||| | |
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| T |
21465975 |
gagaagttgttgttgtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacacaacattggtttctttgtat |
21466074 |
T |
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| Q |
131 |
tcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
182 |
Q |
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| T |
21466075 |
tcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt |
21466126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9677642 - 9677722
Alignment:
| Q |
1 |
atgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag |
81 |
Q |
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|||||| |||||||| | | ||||||||||||||||| ||| || || ||||||||||||||||| || ||||| ||||| |
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| T |
9677642 |
atgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgag |
9677722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 15555171 - 15555098
Alignment:
| Q |
8 |
atggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag |
81 |
Q |
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| T |
15555171 |
atggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag |
15555098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 16729416 - 16729332
Alignment:
| Q |
98 |
aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
182 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || |||| ||| |||||||||| ||| |||||| |
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| T |
16729416 |
aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
16729332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 17706488 - 17706404
Alignment:
| Q |
98 |
aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
182 |
Q |
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||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || |||| ||| |||||||||| ||| |||||| |
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| T |
17706488 |
aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
17706404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 17716476 - 17716392
Alignment:
| Q |
98 |
aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
182 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||| ||||| | ||| || |||| ||| |||||||||| ||| |||||| |
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| T |
17716476 |
aatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
17716392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20154511 - 20154467
Alignment:
| Q |
22 |
gaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc |
66 |
Q |
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||||||||||| ||||| ||| ||||||||||| ||||||||||| |
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| T |
20154511 |
gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagc |
20154467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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