View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15264_low_6 (Length: 382)
Name: NF15264_low_6
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15264_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 29288310 - 29288671
Alignment:
| Q |
12 |
actgaattgacttttcaaaaagtttaaaccttattaatctctttttaaaagaaatgataagacttccctcnnnnnnnnntgataagactctaaaggcaac |
111 |
Q |
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| T |
29288310 |
actgaattgacttttcaaaaagtttaagccttatttatctctttttaaaagaaatgataagacttccctcaaaaaaaaatgataagactctaaaggcaac |
29288409 |
T |
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| Q |
112 |
ataacctcatatcataaaggaaaaatgtaaagataaagaaaaagagagaatgctgggaaaggtttctttttaagagaatctaatgaattttatgagacaa |
211 |
Q |
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| T |
29288410 |
ataacctcatatcataaaggaaaaatgtaaagataaagaaaaagagagaatgctgggaaaggtttctttttaagagaatctaatgaattttatgagacaa |
29288509 |
T |
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| Q |
212 |
accgtccatgatccatataaggcaaaatatgttgaaatgatgatataaagactttatataagggcttggagatacatccataaggaccaaccaaaaacat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29288510 |
accgtccatgatccatataaggcaaaatatgttgaaatgatgatataaagactttatataagggcttggagatacatccataaggaccaaccaaaaacat |
29288609 |
T |
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| Q |
312 |
attgatcaaccaaataaatcagaatggccagcatgcaaattgtcccagcttacaagaataat |
373 |
Q |
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| T |
29288610 |
attgatcaaccaaataaatcagaatggccaacatgcaaattgtcccagcttacaagaataat |
29288671 |
T |
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