View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15264_low_9 (Length: 300)

Name: NF15264_low_9
Description: NF15264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15264_low_9
NF15264_low_9
[»] chr4 (8 HSPs)
chr4 (6-168)||(53995799-53995961)
chr4 (106-168)||(23601912-23601974)
chr4 (106-168)||(51084188-51084250)
chr4 (106-168)||(1458280-1458342)
chr4 (129-168)||(47764735-47764774)
chr4 (105-168)||(47305187-47305246)
chr4 (106-168)||(7290655-7290717)
chr4 (129-168)||(34458061-34458100)
[»] chr7 (6 HSPs)
chr7 (164-283)||(9458523-9458642)
chr7 (106-168)||(4920286-4920348)
chr7 (110-168)||(9458610-9458668)
chr7 (106-168)||(5734457-5734519)
chr7 (106-151)||(3526202-3526247)
chr7 (109-150)||(12217849-12217890)
[»] chr5 (5 HSPs)
chr5 (106-168)||(31302939-31303001)
chr5 (110-168)||(34583549-34583607)
chr5 (106-168)||(40897575-40897637)
chr5 (106-168)||(10541434-10541496)
chr5 (106-168)||(31335254-31335316)
[»] chr3 (4 HSPs)
chr3 (105-168)||(9797931-9797994)
chr3 (109-168)||(53200496-53200555)
chr3 (133-168)||(44027771-44027806)
chr3 (106-167)||(54739879-54739940)
[»] chr2 (11 HSPs)
chr2 (106-168)||(38855707-38855769)
chr2 (105-167)||(34639721-34639783)
chr2 (109-168)||(38119469-38119528)
chr2 (106-168)||(41534997-41535059)
chr2 (112-168)||(5305397-5305454)
chr2 (133-168)||(12068500-12068535)
chr2 (109-168)||(19284821-19284880)
chr2 (121-168)||(30617089-30617136)
chr2 (106-168)||(30487607-30487669)
chr2 (106-168)||(19089850-19089912)
chr2 (106-151)||(32980326-32980371)
[»] chr6 (5 HSPs)
chr6 (105-168)||(16166796-16166859)
chr6 (105-161)||(4127218-4127274)
chr6 (106-168)||(692800-692862)
chr6 (110-168)||(22300504-22300562)
chr6 (106-168)||(22293508-22293570)
[»] chr1 (7 HSPs)
chr1 (106-168)||(40708369-40708431)
chr1 (105-168)||(13142341-13142404)
chr1 (105-168)||(35361806-35361869)
chr1 (106-168)||(3289014-3289075)
chr1 (106-168)||(12569794-12569856)
chr1 (110-168)||(13260534-13260592)
chr1 (110-168)||(13640714-13640772)
[»] chr8 (4 HSPs)
chr8 (106-168)||(29442428-29442490)
chr8 (106-168)||(27209026-27209088)
chr8 (106-168)||(14266509-14266571)
chr8 (110-151)||(29910029-29910070)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 53995961 - 53995799
Alignment:
Q  6 atgtcgaagaatatataatacatcttttaagccgatcatattgtgaggacaattcgatttcagtggatagcgaagatgaagaaacaatatctatagcggc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53995961 atgtcgaagaatatataatacatcttttaagccgatcatattgtgaggacaattcgattccagtggatagcgaagatgaagaaacaatatctatagcggc 53995862  T
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53995861 taggggtgggaatgagccaggccaagccgggctttgcttaaataggctaggcctagttgaaaa 53995799  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 23601912 - 23601974
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  23601912 taggggtgggaatgagcctggccgagtcgggctttgcttaaataggctagacctagttgaaaa 23601974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 51084188 - 51084250
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||    
T  51084188 taggggtgggaatgagccgggccgagccgagctttgcttaaataggccgggcctagttgaaaa 51084250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 1458280 - 1458342
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||| || ||||||||    
T  1458280 taggggtgggaatgagccggggcgagccgggctttgcttaaataggttaggtcttgttgaaaa 1458342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 47764774 - 47764735
Alignment:
Q  129 gagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47764774 gagccgggctttgcttaaataggctaggcctagttgaaaa 47764735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 47305246 - 47305187
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||    |||||||||| ||||| ||||||||||||||||||||||||||    
T  47305246 ctaggggtgggaatgag----gccgagccggactttgattaaataggctaggcctagttgaaaa 47305187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 7290655 - 7290717
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||| ||||||||  ||||||||||| ||||| ||||||||||||||  ||||||||||    
T  7290655 taggggtgagaatgagctgggccgagccggactttggttaaataggctaggtttagttgaaaa 7290717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 34458061 - 34458100
Alignment:
Q  129 gagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  34458061 gagccggactttgcttaaataggctaggcatagttgaaaa 34458100  T

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Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 9458642 - 9458523
Alignment:
Q  164 gaaaagcctggcttggtccgactcattcccaccataagatttcgaagacgaaagaaaattaacaagaaacagatttaaacttgatcatgataaaggaaaa 263  Q
    |||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9458642 gaaaagcccggctcggtccgactcattcccaccataagattttgaagacgaaagaaaattaacgagaaacagatttaaacttgatcatgataaaggaaaa 9458543  T
Q  264 cgaataagattgaaatggaa 283  Q
    ||||||||||||||||||||    
T  9458542 cgaataagattgaaatggaa 9458523  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 4920348 - 4920286
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||  || |||||||||||||||||||||| |||||||||||| |||||    
T  4920348 taggggtgggaatgagctggggcgagccgggctttgcttaaataagctaggcctagtggaaaa 4920286  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 9458610 - 9458668
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||    
T  9458610 ggtgggaatgagtcggaccgagccgggcttttcttaaataggctaggcctagttgaaaa 9458668  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 5734519 - 5734457
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||| ||| |||||||| || |||||||  ||||||||||||||| |||| |||||||||||    
T  5734519 tagggatggaaatgagccgggtcgagccgaactttgcttaaataggataggtctagttgaaaa 5734457  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 3526247 - 3526202
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaatagg 151  Q
    ||||||||||||| |||| | ||||| |||||||||||||||||||    
T  3526247 taggggtgggaataagccggaccgagtcgggctttgcttaaatagg 3526202  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 12217849 - 12217890
Alignment:
Q  109 gggtgggaatgagccaggccgagccgggctttgcttaaatag 150  Q
    ||||||||||||| |||| |||||||||||||| ||||||||    
T  12217849 gggtgggaatgagtcaggtcgagccgggctttgattaaatag 12217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 31302939 - 31303001
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  31302939 taggggtgggaatgagccgggccgagccgggctttgcttaaataggctaggccttgttgaaaa 31303001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 34583607 - 34583549
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  34583607 ggtgggaatgagccgggccgagccgggctttacttaaataggctaggcctagttgaaaa 34583549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 40897637 - 40897575
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  40897637 taggggtgggaatgagccgggccgagtcgggctttgcttaaataggctaggccttgttgaaaa 40897575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 10541434 - 10541496
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||| ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  10541434 taggagtgggaatgagcatggccgagccggactttgcttaaataggctaggcctagttgaaaa 10541496  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 31335254 - 31335316
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||    
T  31335254 taggggtgggaatgagctgggccgagtcgggctttgcttaaataggctaggccttgttgaaaa 31335316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 9797931 - 9797994
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9797931 ctaggggtgggaataagccgggccgagccggactttgcttaaataggctaggcctagttgaaaa 9797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 53200555 - 53200496
Alignment:
Q  109 gggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||| ||| |||||||| ||| |||||||||||| |||||||||| |||||||    
T  53200555 gggtgggaatgggccgggccgagctgggttttgcttaaataagctaggcctaattgaaaa 53200496  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 44027771 - 44027806
Alignment:
Q  133 cgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44027771 cgggctttgcttaaataggttaggcctagttgaaaa 44027806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 54739940 - 54739879
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaa 167  Q
    |||||||||||||||| | |||||||  || ||||||||||||||||  | |||||||||||    
T  54739940 taggggtgggaatgagtctggccgagttggcctttgcttaaataggcctgacctagttgaaa 54739879  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 38855769 - 38855707
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  38855769 taggggtgggaatgagtcgggccgagcggggctttgcttaaataggctaggcctagttgaaaa 38855707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 34639721 - 34639783
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaa 167  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  34639721 ctaggagtgggaatgagccggaccgagccgggctttgcttaaataggctaggtctagttgaaa 34639783  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 38119469 - 38119528
Alignment:
Q  109 gggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||    
T  38119469 gggtgggaatgagctgggccgagccaggctttgcttaaataggttaggcctagttgaaaa 38119528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 41535059 - 41534997
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||   ||| ||||||||||||| ||||||||||||||||||||||||||    
T  41535059 taggggtgggaatgagttgggctgagccgggctttggttaaataggctaggcctagttgaaaa 41534997  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5305397 - 5305454
Alignment:
Q  112 tgggaatgagccagg-ccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||    
T  5305397 tgggaatgagcccgggccgagccgggctttgcttaaataggccaggcctagttgaaaa 5305454  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 12068500 - 12068535
Alignment:
Q  133 cgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||    
T  12068500 cgggctttgcttaaataggctaggcctagttgaaaa 12068535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 19284880 - 19284821
Alignment:
Q  109 gggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||| |||||||||||| ||| |||||||| || | |||||||||||||    
T  19284880 gggtgggaatgagccgggccgagccgggatttacttaaatacgccaagcctagttgaaaa 19284821  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 30617089 - 30617136
Alignment:
Q  121 gccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  30617089 gccaggcctagccgagctttgcttaaataggccaggcctagttgaaaa 30617136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 30487607 - 30487669
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||| || |||||| | || ||||||||  |||||||||||||||||||||||||||||||    
T  30487607 taggggaggaaatgagtcgggtcgagccggattttgcttaaataggctaggcctagttgaaaa 30487669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 19089850 - 19089912
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||   || | ||||||||||||||||||||||||  || ||||||||||    
T  19089850 taggggtgggaatgagatgggtcaagccgggctttgcttaaataggctgagcttagttgaaaa 19089912  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 32980326 - 32980371
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaatagg 151  Q
    |||||||||||||||||| ||| ||||  |||||||||||||||||    
T  32980326 taggggtgggaatgagccgggctgagctaggctttgcttaaatagg 32980371  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 16166859 - 16166796
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||    
T  16166859 ctaggggtgggaatgagccgggccgagccggacattgcttaaataagctaggcctagttgaaaa 16166796  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 4127218 - 4127274
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctag 161  Q
    |||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  4127218 ctagggatgagaatgagccgggccgagtcgggctttgcttaaataggctaggcctag 4127274  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 692800 - 692862
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||| |||||||||| | |  |||| ||||||||||||||||||||||||||||||||||||    
T  692800 tagggctgggaatgagtcggatcgagtcgggctttgcttaaataggctaggcctagttgaaaa 692862  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 22300562 - 22300504
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||| ||||||||||||||||||||||||| |   ||||||||||||||    
T  22300562 ggtgggaatgagccgggccgagccgggctttgcttaaatatgtctggcctagttgaaaa 22300504  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 22293570 - 22293508
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||  |||||||||  ||||||||||||||||  | ||||||||||||    
T  22293570 taggggtgggaatgagccgagccgagccgaactttgcttaaataggcctgacctagttgaaaa 22293508  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 40708431 - 40708369
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||    
T  40708431 taggggtgggaatgagccgggccgagtcggactttggttaaataggctaggcctagttgaaaa 40708369  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 13142341 - 13142404
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||  |||||||||||||||    
T  13142341 ctagggttgggaatgagccgggccgagccggactttgcttaaataggtcaggcctagttgaaaa 13142404  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 35361806 - 35361869
Alignment:
Q  105 ctaggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||| |||||||    
T  35361806 ctaggggtgggaatgagccgggccgagccgagctttgcttatataggcttggcctatttgaaaa 35361869  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 3289014 - 3289075
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||    
T  3289014 taggggtgggaatgagataggccgagccgggcttt-cttaaataggttaggcctagttgaaaa 3289075  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 12569856 - 12569794
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||| || ||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  12569856 tagggatgcgaatgagctgggccgagctgggctttgcttaaataggctaggcctagttgaaaa 12569794  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 13260592 - 13260534
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||    
T  13260592 ggtgggaatgagtcgggccgagccgggatttgcttaaatagactaggcctagttgaaaa 13260534  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 13640714 - 13640772
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||| ||||||||||||||||||||||||| |   ||||||||||||||    
T  13640714 ggtgggaatgagccgggccgagccgggctttgcttaaatatgtctggcctagttgaaaa 13640772  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 29442428 - 29442490
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||    
T  29442428 taggggtgggaatgagtcgggccgagtcggactttgcttaaataggttaggcctagttgaaaa 29442490  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 27209026 - 27209088
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    ||||||||| |||||| | || |||| ||||||||||||||||||| ||||||||||||||||    
T  27209026 taggggtggaaatgagtcgggtcgagtcgggctttgcttaaataggttaggcctagttgaaaa 27209088  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 14266571 - 14266509
Alignment:
Q  106 taggggtgggaatgagccaggccgagccgggctttgcttaaataggctaggcctagttgaaaa 168  Q
    |||||||||||||  ||| | |||||| ||||||||||||||||||  |||||||||||||||    
T  14266571 taggggtgggaataggccggaccgagctgggctttgcttaaataggtcaggcctagttgaaaa 14266509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 29910070 - 29910029
Alignment:
Q  110 ggtgggaatgagccaggccgagccgggctttgcttaaatagg 151  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  29910070 ggtgggaatgagttaggtcgagccgggctttgcttaaatagg 29910029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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