View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15265_high_2 (Length: 358)
Name: NF15265_high_2
Description: NF15265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15265_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 114 - 343
Target Start/End: Complemental strand, 1051912 - 1051686
Alignment:
| Q |
114 |
gcggatatcggtagttgggttagtggtcaatgggtcatgtggcggtggaagaggtcgttgtttgtatgggaagaagaagttttcactgaattggaagcta |
213 |
Q |
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| T |
1051912 |
gcggatatcggtagttgggttagtggtcaatgggtcatgtggcggcggaagaggtcgttgtttgtatgggaagaag---ttttcaatgaattggaagcta |
1051816 |
T |
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| Q |
214 |
cccgtggtgatgttggacagaacttagtaggaggtagtgatggggtggatttggttgttagaaaaatgttgaggggttctcggttagttcttgttttaaa |
313 |
Q |
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| T |
1051815 |
cccgtggtggtgttggacagaacttagtaggaggtagtgatggggtggatttggttgttagaaaaatgttgaggggttctcggttagttcttgttttaaa |
1051716 |
T |
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| Q |
314 |
catttagttttgcttttatatgttcaatct |
343 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
1051715 |
catttggttttgcttttatatgttcaatct |
1051686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1052097 - 1052001
Alignment:
| Q |
1 |
tggtttcatgatgggtattagaatctgtaataaagatatttacatattctaataatgtggttacaagaagattgaaagatggacaaagtgttatatt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052097 |
tggtttcatgatgggtattagaatctgtaataaagatatttacatattctaataatgtggttacaagaagattgaaagatggacaaagtgttatatt |
1052001 |
T |
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