View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15265_low_1 (Length: 396)
Name: NF15265_low_1
Description: NF15265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15265_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 2701093 - 2701476
Alignment:
| Q |
1 |
ttatctcttattcagaaataataataataatctttagtgcacttcgtttttctttttatagattgactcttttgatgagataagttagtttatgttggat |
100 |
Q |
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| T |
2701093 |
ttatctcttattcagaaataataataataatctttagtgcacttcgtttttctttttatagattggctcttttgatgagataagttagtttatgttggat |
2701192 |
T |
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| Q |
101 |
agata----taagtatggatagtgatcgaaacatagtcacataattcacaatacgcgttactatggatatggatt-----cacacgagttgagaaaaaat |
191 |
Q |
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| T |
2701193 |
aggtataagtaagtatggatggtgatcgaaacatagtcacataattcgcaatacacgttactatggatatggatttgcggtacacgatttgagataaaat |
2701292 |
T |
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| Q |
192 |
caatatgttatatagttttggtactaattggttcgtactaattaaatatagcaacctatcagcaagctattacctcnnnnnnnnnntatagtaagctacc |
291 |
Q |
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| T |
2701293 |
taatatgttatatagttttggtactagttggttcgtactaattaaatatagtaagctatcagcaagctattacctc-aaaaaaaaatatagtaagctatc |
2701391 |
T |
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| Q |
292 |
agtaaattttaggaaatcgattcttttt-actagcattttaaacaaaaaaggtagaagaatcgtagtcagctacaacaaactaatttcc |
379 |
Q |
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| T |
2701392 |
agtaagttttaagaaatcgattctttttaactagcatttt-aacaaaaaaggtagaagaa---tagtcagctgcaacaaactaatttcc |
2701476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 2701549 - 2701610
Alignment:
| Q |
318 |
ttactagcattttaaacaaaaaaggtagaagaatcgtagtcagctacaacaaactaatttcc |
379 |
Q |
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| T |
2701549 |
ttactagcattttaaacaaaaaaggtagaagaatcgtagtcagctgcaacaaactagtttcc |
2701610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 2701643 - 2701706
Alignment:
| Q |
278 |
tatagtaagctaccagtaaatttt-aggaaatcgattctttttactagcattttaaacaaaaaa |
340 |
Q |
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| T |
2701643 |
tatagtaagctatcattaaatttttaagaaatcgattatttttactagcattttaaataaaaaa |
2701706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 2701815 - 2701887
Alignment:
| Q |
306 |
aatcgattctttttactagcattttaaacaaaa-aaggtagaagaatcgtagtcagctacaacaaactaatttcc |
379 |
Q |
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| T |
2701815 |
aatcgattctttttac--gcattttaaacaaaaaaaggtagaaaaatcgtaggtagcagcaacaaactagtttcc |
2701887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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