View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15265_low_4 (Length: 236)
Name: NF15265_low_4
Description: NF15265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15265_low_4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 1745281 - 1745064
Alignment:
| Q |
19 |
ataaattcaactagaaagtagcaatttcgtcccnnnnnnncaaacaaactagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatata |
118 |
Q |
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| T |
1745281 |
ataaattcaactagaaagtagcaatttcgtcccaaaaaaacaaacaaactagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatata |
1745182 |
T |
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| Q |
119 |
aaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatcctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1745181 |
aaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatcctt |
1745082 |
T |
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| Q |
219 |
gctggtagtagtaggatc |
236 |
Q |
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|||||||||||||||||| |
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| T |
1745081 |
gctggtagtagtaggatc |
1745064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 1739895 - 1739732
Alignment:
| Q |
65 |
aactagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatc |
164 |
Q |
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| T |
1739895 |
aactagagagtagcaatcaaatcaacagcaacattgacatgaaaacaaaatataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatc |
1739796 |
T |
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| Q |
165 |
ataattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagta |
228 |
Q |
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| T |
1739795 |
ataattggaggattcttcttccgagttaaacttagacagatcaatattatccttggtagtagta |
1739732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 1725537 - 1725376
Alignment:
| Q |
68 |
tagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcata |
167 |
Q |
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||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| | |||||||| |
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| T |
1725537 |
tagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcata |
1725438 |
T |
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| Q |
168 |
attggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtag |
229 |
Q |
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| T |
1725437 |
attggaggattcttcttcagctttgaacttcgacatatcaatatcatccttggtggtagtag |
1725376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 1760949 - 1760835
Alignment:
| Q |
71 |
agagtagcaatcaaattaacagcaacattgccat-gaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataat |
169 |
Q |
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||||||||||| ||||||||| |||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||| || | || || ||| |
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| T |
1760949 |
agagtagcaattaaattaacaatgacattgacacagaaaacaaaatataaaa-ctgaatttaaagcttaagtgataaatcaagcgcataagattccgaat |
1760851 |
T |
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| Q |
170 |
tggaggattcttcttc |
185 |
Q |
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|||||||||||||||| |
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| T |
1760850 |
tggaggattcttcttc |
1760835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 1715393 - 1715480
Alignment:
| Q |
66 |
actagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagccc |
155 |
Q |
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||||||||||| |||||||||||||| ||||||| |||| ||||||||||| ||||||||| ||| ||| ||||||| ||||||||||| |
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| T |
1715393 |
actagagagtaacaatcaaattaacaataacattgacatggaaacaaaatat-aaaactgaa-ttagagcttaagtgacaaatcaagccc |
1715480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 1764007 - 1763952
Alignment:
| Q |
80 |
atcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagc |
135 |
Q |
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|||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
1764007 |
atcaaattaacaataacatcgacatggaaacaaaatataaaaactgaatttaaagc |
1763952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 3167947 - 3167858
Alignment:
| Q |
65 |
aactagagagtagcaatcaaattaacagcaacattgcc--atgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagc |
153 |
Q |
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|||| |||||||||||||||||||||| ||||||| | ||| |||||||||| ||||| | || ||||||| | ||||||||||||||| |
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| T |
3167947 |
aactggagagtagcaatcaaattaacaagaacattgacttatggaaacaaaatacaaaaatttaa-ttaaagcttgagtgataaatcaagc |
3167858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 7498369 - 7498486
Alignment:
| Q |
70 |
gagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaat--ttaaagcctaagtgataaatcaagcccagacgaatcata |
167 |
Q |
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|||||||||||| |||||||| ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||| || || ||||||||||| | |
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| T |
7498369 |
gagagtagcaataaaattaaccataacattgagatgggaacaaaatgtaaaacatgaatatttaaagcctaagtgttaagtcgagtccagacgaatccaa |
7498468 |
T |
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| Q |
168 |
attggaggattcttcttc |
185 |
Q |
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|| ||||| ||||||||| |
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| T |
7498469 |
atcggagggttcttcttc |
7498486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 23857189 - 23857134
Alignment:
| Q |
71 |
agagtagcaatcaaattaacagcaacattgccat--gaaaacaaaatataaaaact |
124 |
Q |
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||||||||||||||||||||| ||||||||||| | ||||||||||| |||||| |
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| T |
23857189 |
agagtagcaatcaaattaacaataacattgccataaggaaacaaaatatgaaaact |
23857134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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