View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15266_high_2 (Length: 377)
Name: NF15266_high_2
Description: NF15266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15266_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 32 - 365
Target Start/End: Original strand, 27318112 - 27318453
Alignment:
| Q |
32 |
ctaacttgtgatcatcctaaaaaggaaagcttagtcaagactgaggacaattattgctcattttagtcaacattgaagactagctatgtatgtttgtgag |
131 |
Q |
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| T |
27318112 |
ctaacttgtgatcatcctaaaaaggaaagtttagtcaagactgaggacaattattgctgattttagtcaacattgaagactagctatgtatgtttgtgag |
27318211 |
T |
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| Q |
132 |
gctgaaaacagaaacgtgcttcaataattccaatcatgtgtattcataatcagataagactagtgtag--------tagccaaaatctaaacatcatcct |
223 |
Q |
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| T |
27318212 |
gctgaaaacagaaacgtgcttcaataattccaatcatgtgtattcataatcagataagactagtgtagtagccaattagccaaaatctaaacatcatcct |
27318311 |
T |
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| Q |
224 |
caccaaacaaaaatggctgagggagaagcaatagttctgaaatctcttgaggattttggtcctcaaaagaagctcaaaaggaacaagtttgcttgtgctt |
323 |
Q |
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| T |
27318312 |
caccaaacaaaaatggctgagggagaagcaacagttctgaaatctcttgaagattttggtcctcaaaaaaagctcaaaaggaacaagtttgcttgtgctt |
27318411 |
T |
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| Q |
324 |
gtgctatcttggcttctatgacttctatcctacttggatatg |
365 |
Q |
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| T |
27318412 |
gtgctatcttggcttctatgacttctatcctacttggatatg |
27318453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 26152244 - 26152334
Alignment:
| Q |
275 |
gattttggtcctcaaaagaagctcaaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttggatatg |
365 |
Q |
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| T |
26152244 |
gattttgatccacaaaagaagcctaagagaaataagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatg |
26152334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 26152408 - 26152474
Alignment:
| Q |
299 |
aaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttggatatg |
365 |
Q |
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| T |
26152408 |
aaaagaaacaagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatg |
26152474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 54347777 - 54347882
Alignment:
| Q |
260 |
ctgaaatctcttgaggattttggtcctcaaaagaagctcaaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttg |
359 |
Q |
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| T |
54347777 |
ctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttg |
54347876 |
T |
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| Q |
360 |
gatatg |
365 |
Q |
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| T |
54347877 |
gttatg |
54347882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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