View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15266_low_1 (Length: 513)
Name: NF15266_low_1
Description: NF15266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15266_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Original strand, 37358126 - 37358585
Alignment:
| Q |
15 |
tatctagttaagatgtaactatagttcattaactatagtgtaataatatacagtatattccgaaatacttagaaaaccaagtttacaagaaagtgatttg |
114 |
Q |
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| T |
37358126 |
tatctagttaagatgtaactatagttcattaactatagtgtaataatata-----tattccgaaacacttagaaagccaagtttacaagaaagtgattt- |
37358219 |
T |
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| Q |
115 |
gattacctgggcatttggattacctaggcattcaagaaataatcacaattgttttttcattttcaatttatggaacccacacaatgtaacaccatgcatg |
214 |
Q |
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| T |
37358220 |
----------------ggattacctaggcattcaagaaataatcacaattgttttttcattttcaatttatggaacccacacaatgtaacaccatgcatg |
37358303 |
T |
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| Q |
215 |
tgctacattctcacactttaatttagacctaagtttcatttcctcgtgattnnnnnnnttagttctctttcggttagacttttgttgaaaacatatttat |
314 |
Q |
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| T |
37358304 |
tgctacattctcacactttaatttagacctaagtttcatttcctcgttattaaaaaaattagttctctttcggttagacttttgttgaaaacatatttct |
37358403 |
T |
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| Q |
315 |
attgtagcccgcgacaagaataaagtgagagcgattaagaccccgtgaatgcaaccaaacggagaagcagattgggataatgaacacgattgtgttactt |
414 |
Q |
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| T |
37358404 |
attgtagcccgtgacaagaataaagtgagagcgattaagaccccgtgaatgcaaccaaatggagaagcagattgggataatgaacacgattgtgttactt |
37358503 |
T |
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| Q |
415 |
-acattgaagtttatctagaatacaattttgtttcaaaagacaaaatgagagacgattttgacaaaatcaactagacaatat |
495 |
Q |
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| T |
37358504 |
aacattgaagtttatctagaatacaattttgtttcaaaagacaaaatgagagacgattttgacaaaatcaactagacaatat |
37358585 |
T |
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