View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15266_low_2 (Length: 510)
Name: NF15266_low_2
Description: NF15266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15266_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 65 - 496
Target Start/End: Complemental strand, 8226073 - 8225648
Alignment:
| Q |
65 |
acataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaactcgttataaatatatgag |
164 |
Q |
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| T |
8226073 |
acataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcaaaaaaaagataactttaaactcgttataaatatatgag |
8225974 |
T |
|
| Q |
165 |
ttcattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcactaattccctgtcgtttgtc |
264 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
8225973 |
tttattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagattgttgcttcactaattccgtgtcatttgtc |
8225874 |
T |
|
| Q |
265 |
tatgtctttatgtacatataaagcttctttattatctatcattcctaatttcaaacaannnnnnnnnnnnnnnnnncttaatcatctaaagcattgccat |
364 |
Q |
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| T |
8225873 |
t--------atgtacatataaagcttctttattatctatcattcctaatttcaaacaattttttttgtttttgtttcttaatcatctaaagcattgccat |
8225782 |
T |
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| Q |
365 |
tttgtct--ccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatgatacaatggaagtcattaatgatgtcatgt |
462 |
Q |
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| T |
8225781 |
tttgtctcgcgctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatgatacaatggaagtcattaatgatgtcatat |
8225682 |
T |
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| Q |
463 |
ttgttcgtcttctttgttttattgggtctattgt |
496 |
Q |
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| T |
8225681 |
ttgttcatcttctttattttattgggtctattgt |
8225648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 8214562 - 8214379
Alignment:
| Q |
67 |
ataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaactcgttataaatatatgagtt |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8214562 |
ataatacacaaattcttatctattgagacacctcaccaatatgtattattttctctatcagaaaaaagataactttgaactcgttataaatatatgagtt |
8214463 |
T |
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| Q |
167 |
cattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcactaatt |
250 |
Q |
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| T |
8214462 |
tattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcactaatt |
8214379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 341 - 496
Target Start/End: Complemental strand, 8214352 - 8214197
Alignment:
| Q |
341 |
cttaatcatctaaagcattgccattttgtctccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatgatacaatg |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8214352 |
cttaatcatctaaagcattgccattttgtctccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttccagggatgatacaatg |
8214253 |
T |
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| Q |
441 |
gaagtcattaatgatgtcatgtttgttcgtcttctttgttttattgggtctattgt |
496 |
Q |
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| T |
8214252 |
gaagtcattaatgatgtcatgtttgttcgtcttctttgttttattgggtctattgt |
8214197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 8236742 - 8236589
Alignment:
| Q |
68 |
taatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaactcgttataaatatatgagttc |
167 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
8236742 |
taatacacaaattcttatctattgagacacctcatcaacacgtgtccttttctctatcagaaaaa-gataactttaaactcgttataaatatataagttc |
8236644 |
T |
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| Q |
168 |
attctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaa |
222 |
Q |
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|||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
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| T |
8236643 |
attctcatctttgacaccatttataatgataaatccaatttcttcaaacctttaa |
8236589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 341 - 496
Target Start/End: Complemental strand, 8236433 - 8236284
Alignment:
| Q |
341 |
cttaatcatctaaagcattgccattttgtctccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatgatacaatg |
440 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
8236433 |
cttaatcatc-aaagcattgccattttgtctccctggatac-----catgggagaaaaactcctgaattttagcatcatttttataaggatgatacaatg |
8236340 |
T |
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| Q |
441 |
gaagtcattaatgatgtcatgtttgttcgtcttctttgttttattgggtctattgt |
496 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
8236339 |
gaagtcattaatgatgtcatatttgttcgtcttctttgttttattgggtcgattgt |
8236284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 8236552 - 8236458
Alignment:
| Q |
224 |
aattgtgagaatgttgcttcactaattccctgtcgtttgtctatgtctttatgtacatataaagcttctttattatctatcattcctaatttcaa |
318 |
Q |
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|||||||||| |||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
8236552 |
aattgtgagattgttgcttcactaattccttgtcatttgtctatgtctttaggtagatataaagcttctttattatctattattcataatttcaa |
8236458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 460
Target Start/End: Complemental strand, 8232857 - 8232755
Alignment:
| Q |
358 |
ttgccattttgtctccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatgatacaatggaagtcattaatgatgt |
457 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||||| ||| ||||||| ||| ||| |||||||| ||||||| |
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| T |
8232857 |
ttgccattatgtctccctggatccatttccatgagagaaaaactgcagaaaaattgcatcattgttaaagggatgttactatgaaagtcattgatgatgt |
8232758 |
T |
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| Q |
458 |
cat |
460 |
Q |
| |
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||| |
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| T |
8232757 |
cat |
8232755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 8223736 - 8223646
Alignment:
| Q |
406 |
aatttttgcatcatttttacagggatgatacaatggaagtcattaatgatgtcatgtttgttcgtcttctttgttttattgggtctattgt |
496 |
Q |
| |
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||||||||||||||||| | | || |||||| || || |||||| |||||||||| ||| |||| |||||| || |||| |||||||||| |
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| T |
8223736 |
aatttttgcatcattttcaaatggctgatactatagaggtcattgatgatgtcattttttttcggattctttattatatttggtctattgt |
8223646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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