View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15266_low_5 (Length: 259)
Name: NF15266_low_5
Description: NF15266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15266_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 24547150 - 24546921
Alignment:
| Q |
21 |
atcaaaacaattgcaactacacttattcatatgaggacgattccataacagaaggagtgttggcacaggaaacacttaccttaacatcaaccacagggaa |
120 |
Q |
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| T |
24547150 |
atcaaaacaattgcaactacacttattcatatgaggacgattccataacagaaggagtgttggcacaggaaacacttaccttaacatcaaccacagggaa |
24547051 |
T |
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| Q |
121 |
accagtggcccttaaaggcgttatttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggaccc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24547050 |
accagtggcccttaaaggcgttatttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggaccc |
24546951 |
T |
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| Q |
221 |
ttgtcactcgtttctcaaataggttcttct |
250 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24546950 |
ttgtcactcgtttctcaaataggttcttct |
24546921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 24539722 - 24539536
Alignment:
| Q |
60 |
attccataacagaaggagtgttggcacaggaaacacttaccttaacatcaaccacagggaaaccagtggcccttaaaggcgttatttttggatgtggaca |
159 |
Q |
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||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || ||||| ||||||||||||| ||||| |
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| T |
24539722 |
attccataacacaaggagtgttggcacaagaaacacttactttaacatcaaccacaggggaaccagtggcctttcaaggcattatttttggatgcggaca |
24539623 |
T |
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| Q |
160 |
taacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaataggttcttc |
249 |
Q |
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| T |
24539622 |
caacaaca---gtggtttcaatgaccgcgagatgggtttaataggtcttggaagaggacccctgtcactcatttctcaaataggttcttc |
24539536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 15798264 - 15798036
Alignment:
| Q |
21 |
atcaaaacaattgcaactacacttattcatatgaggacgattccataacagaaggagtgttggcacaggaaacacttaccttaacatcaaccacagggaa |
120 |
Q |
| |
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|||||| ||||||||| |||| ||||| |||| |||| |||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||| | |
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| T |
15798264 |
atcaaatcaattgcaaatacaactattcttatgttgacggttccgaaacacaaggagtgttggcacaagaaacacttactttaacatcaaccacagggga |
15798165 |
T |
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| Q |
121 |
accagtggcccttaaaggcgttatttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggaccc |
220 |
Q |
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|||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15798164 |
accagtggcctttaaaggagttatttttggatgtggacacaacaataatggtgctttcaatgataaagagatgggtataataggtcttggaagaggaccc |
15798065 |
T |
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| Q |
221 |
ttgtcactcgtttctcaaataggttcttc |
249 |
Q |
| |
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|||||||| |||||||||||||||||||| |
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| T |
15798064 |
ttgtcacttgtttctcaaataggttcttc |
15798036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 1680185 - 1680024
Alignment:
| Q |
83 |
gcacaggaaacacttaccttaacatcaaccacagggaaaccagtggcccttaaaggcgttatttttggatgtggacataacaacaatggtgttttcaatg |
182 |
Q |
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||||| |||||| ||||||||||||||| ||| |||||||| | ||||| |||| || ||||||| |||||||||||||||| || ||| |||| |
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| T |
1680185 |
gcacaagaaacagttaccttaacatcaaacacggggaaacctatttcccttcaaggaattctttttggttgtggacataacaacacagggaattttaatg |
1680086 |
T |
|
| Q |
183 |
acaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaataggt |
244 |
Q |
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|| | ||||||||| | || ||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
1680085 |
accatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggt |
1680024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 43058745 - 43058819
Alignment:
| Q |
56 |
gacgattccataacagaaggagtgttggcacaggaaacacttaccttaacatcaaccacagggaaaccagtggcc |
130 |
Q |
| |
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|||| ||||| |||| |||||||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
43058745 |
gacggttccaaaacataaggagtgttggtacaagaaacaattaccttaacatcaaccataggggaaccagtggcc |
43058819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 1661326 - 1661226
Alignment:
| Q |
144 |
tttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaatagg |
243 |
Q |
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||||||| |||||||||||||||| ||| | ||| |||||| | ||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||| |
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| T |
1661326 |
tttttggttgtggacataacaacactgggggttttaatgaccatgagatgggtctaattggtcttggaggaggaccaacatcactcatttctcaaatagg |
1661227 |
T |
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| Q |
244 |
t |
244 |
Q |
| |
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| |
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| T |
1661226 |
t |
1661226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 1668588 - 1668488
Alignment:
| Q |
144 |
tttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaatagg |
243 |
Q |
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||||||| |||||||||||||||| ||| | ||| |||||| | ||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||| |
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| T |
1668588 |
tttttggttgtggacataacaacactgggggttttaatgaccatgagatgggtctaattggtcttggaggaggaccaacatcactcatttctcaaatagg |
1668489 |
T |
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| Q |
244 |
t |
244 |
Q |
| |
|
| |
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|
| T |
1668488 |
t |
1668488 |
T |
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