View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15267_low_3 (Length: 237)
Name: NF15267_low_3
Description: NF15267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15267_low_3 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: scaffold0291 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4069 - 3849
Alignment:
| Q |
1 |
gtggcgaagttaaccttgccgttgaacaaattcgagactcggatggatcatcggccagtgcattcgcggtggtataacgttgaaagatttggttttggcg |
100 |
Q |
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| T |
4069 |
gtggcaaagttaaccttgccgttgaacaaattcgagactcggatggatcatcggccagtgcattcgcggtggtacaacgttgaaagatttggtttcggcg |
3970 |
T |
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| Q |
101 |
ttctcgaaggtgataaaggtaatgaacttaaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttcttgatgaatccacaat |
200 |
Q |
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| T |
3969 |
ttctcgaaggtgataaaggtaatgaacttaaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttcttgatgaatccacaat |
3870 |
T |
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| Q |
201 |
gtatataagtgatacaagaac |
221 |
Q |
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| T |
3869 |
gtatataagtgatacaagaac |
3849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 7916179 - 7916069
Alignment:
| Q |
87 |
atttggttttggcgttctcgaaggtgataaaggtaatgaacttaaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttctt |
186 |
Q |
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| T |
7916179 |
atttggttttggtgcacttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgtttta |
7916080 |
T |
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| Q |
187 |
gatgaatccac |
197 |
Q |
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| T |
7916079 |
gatgaatccac |
7916069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 7906990 - 7906941
Alignment:
| Q |
120 |
taatgaacttaaattctcaagtaggattcaccttagagtttgtcttgaag |
169 |
Q |
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| T |
7906990 |
taatgtacttaaatttccaagtaggattcaccttagagtttgtcttgaag |
7906941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 13983 - 13917
Alignment:
| Q |
128 |
ttaaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttcttgatgaatc |
194 |
Q |
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| T |
13983 |
ttaaatttgcaagtaggattcacatgagggtttgtctagaaggtggttatcatgttttggatgaatc |
13917 |
T |
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