View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15268_high_5 (Length: 235)

Name: NF15268_high_5
Description: NF15268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15268_high_5
NF15268_high_5
[»] chr6 (37 HSPs)
chr6 (28-219)||(5100729-5100920)
chr6 (28-219)||(5135830-5136021)
chr6 (13-203)||(5351578-5351768)
chr6 (21-136)||(5242506-5242621)
chr6 (13-134)||(5098389-5098510)
chr6 (13-136)||(5177917-5178040)
chr6 (13-136)||(5279742-5279865)
chr6 (13-136)||(5427078-5427201)
chr6 (13-131)||(5180773-5180891)
chr6 (13-136)||(5688897-5689020)
chr6 (13-136)||(5126623-5126746)
chr6 (13-136)||(5156007-5156130)
chr6 (13-133)||(5346207-5346327)
chr6 (139-219)||(5398380-5398460)
chr6 (13-136)||(5065443-5065566)
chr6 (152-219)||(5255983-5256050)
chr6 (24-131)||(5283223-5283330)
chr6 (13-136)||(5372275-5372398)
chr6 (15-130)||(5398226-5398341)
chr6 (143-203)||(5439361-5439421)
chr6 (34-133)||(5072679-5072778)
chr6 (13-131)||(5439189-5439307)
chr6 (20-131)||(5448794-5448905)
chr6 (14-136)||(2939094-2939216)
chr6 (13-87)||(5334363-5334437)
chr6 (139-195)||(5242371-5242427)
chr6 (139-203)||(5352715-5352779)
chr6 (34-134)||(23127306-23127406)
chr6 (13-136)||(5352857-5352980)
chr6 (40-129)||(5253738-5253827)
chr6 (143-219)||(5180643-5180719)
chr6 (24-131)||(5256113-5256220)
chr6 (158-219)||(5334453-5334515)
chr6 (149-203)||(5448965-5449019)
chr6 (34-102)||(5124471-5124539)
chr6 (174-219)||(5283108-5283153)
chr6 (139-202)||(5155866-5155929)
[»] chr3 (8 HSPs)
chr3 (12-130)||(47985393-47985511)
chr3 (12-130)||(48003967-48004085)
chr3 (12-130)||(47994680-47994798)
chr3 (12-130)||(48013252-48013370)
chr3 (150-219)||(47985229-47985298)
chr3 (150-219)||(47994516-47994585)
chr3 (150-219)||(48003803-48003872)
chr3 (150-219)||(48013088-48013157)
[»] chr7 (1 HSPs)
chr7 (13-136)||(36212915-36213038)
[»] chr4 (6 HSPs)
chr4 (35-136)||(4122638-4122739)
chr4 (15-136)||(4132612-4132730)
chr4 (47-136)||(4319296-4319385)
chr4 (47-136)||(4346575-4346664)
chr4 (34-134)||(25569039-25569142)
chr4 (36-136)||(4362753-4362853)
[»] scaffold1476 (1 HSPs)
scaffold1476 (36-136)||(43-143)
[»] chr2 (1 HSPs)
chr2 (36-136)||(22583296-22583396)
[»] scaffold0294 (2 HSPs)
scaffold0294 (34-103)||(7904-7973)
scaffold0294 (139-191)||(7741-7793)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 5100920 - 5100729
Alignment:
Q  28 gagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatat 127  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  5100920 gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatac 5100821  T
Q  128 gatgaaccatatgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5100820 gatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaat 5100729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 5136021 - 5135830
Alignment:
Q  28 gagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatat 127  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  5136021 gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatac 5135922  T
Q  128 gatgaaccatatgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5135921 gatgaaccatctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaat 5135830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 5351578 - 5351768
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||||||||||||  ||||||||||||||||||  ||||||||||||| ||| || ||||||| |||||   || |||||||||||||||||||    
T  5351578 agatgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagta 5351677  T
Q  113 gtttatctcgtatatgatgaaccatatgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  5351678 gtttatctcgtatatgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaa 5351768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 5242621 - 5242506
Alignment:
Q  21 aggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatct 120  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  5242621 aggggctgagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatct 5242522  T
Q  121 cgtatatgatgaacca 136  Q
    ||||||||||||||||    
T  5242521 cgtatatgatgaacca 5242506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 5098389 - 5098510
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||| | ||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |    
T  5098389 agatgaggagagccagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagca 5098488  T
Q  113 gtttatctcgtatatgatgaac 134  Q
    |||||||| |||||||||||||    
T  5098489 gtttatctggtatatgatgaac 5098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5177917 - 5178040
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||| || |||  |    
T  5177917 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5178016  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||||||||||||||||||    
T  5178017 gtttatctcgtatatgatgaacca 5178040  T

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Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5279742 - 5279865
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||| || |||  |    
T  5279742 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5279841  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||||||||||||||||||    
T  5279842 gtttatctcgtatatgatgaacca 5279865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5427078 - 5427201
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| |||||| | || | |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||  |||||||||    
T  5427078 agatgaggagggggaaagagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagta 5427177  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||||||||||||||||||    
T  5427178 gtttatctcgtatatgatgaacca 5427201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 5180891 - 5180773
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||| ||||||| ||||||||| |||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||| |    
T  5180891 agatgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagca 5180792  T
Q  113 gtttatctcgtatatgatg 131  Q
     ||||||| ||||||||||    
T  5180791 atttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5689020 - 5688897
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| || |||  ||||||||||||| ||||||||||||| || |||  |    
T  5689020 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaaca 5688921  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||||||||||||||||||    
T  5688920 gtttatctcgtatatgatgaacca 5688897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5126746 - 5126623
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| |||||| |||| | |||||||||||||||| ||||||||||||| ||  | |||||||||||| ||||| ||||||||||||| |||||||      
T  5126746 agatgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagct 5126647  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||| ||||||||||||||    
T  5126646 gtttatctcatatatgatgaacca 5126623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5156130 - 5156007
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||  | ||||||| ||||  | |||||||||||| ||||||  |    
T  5156130 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaaca 5156031  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    |||||||| ||||| |||||||||    
T  5156030 gtttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 5346207 - 5346327
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||||| ||||| |  |||||||||||||||||||||||||||||||| || || |||||| |||||||  ||||||||||||| ||||||| |    
T  5346207 agatgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagca 5346306  T
Q  113 gtttatctcgtatatgatgaa 133  Q
     |||||||| |||||||||||    
T  5346307 atttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 5398380 - 5398460
Alignment:
Q  139 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||    
T  5398380 tgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaat 5398460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5065566 - 5065443
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||||||||||| | |||||||||||| |||||||| || ||||||||  | |||||||||||||||||| ||||| ||||||| | ||||  |    
T  5065566 agatgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaaca 5065467  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
    ||||||||| ||||||||||||||    
T  5065466 gtttatctcatatatgatgaacca 5065443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 5256050 - 5255983
Alignment:
Q  152 tctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaat 5255983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5283330 - 5283223
Alignment:
Q  24 ggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgt 123  Q
    ||||||||| | |||||||||| ||||| |||||||||||||| ||| |  |||||||||| ||||||||||||||||| ||||||| | ||||||| ||    
T  5283330 ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggt 5283231  T
Q  124 atatgatg 131  Q
    ||||||||    
T  5283230 atatgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5372275 - 5372398
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||  | ||||| | |||||   |||||||||||| ||||||  |    
T  5372275 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaaca 5372374  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
     ||||||||||||| |||||||||    
T  5372375 atttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  15 atgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagt 114  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| || || ||  ||||||| |||||   |||||||||||| ||||||  |||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  115 ttatctcgtatatgat 130  Q
    |||||| |||||||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 5439361 - 5439421
Alignment:
Q  143 aagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa 203  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  5439361 aagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaa 5439421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 5072778 - 5072679
Alignment:
Q  34 agtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaa 133  Q
    ||||||||||||||| ||||||||| ||||||| || || |||||| ||||||||  ||||||||||||||||||| || |||||||| |||| ||||||    
T  5072778 agtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatatacgatgaa 5072679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 5439189 - 5439307
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||||||||||||  |  |||||||||||||||||||||||||||||| || ||| |||||||  ||||   ||||||||  |||||||||| |    
T  5439189 agatgaggaggggcagaggttaaaatcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagca 5439288  T
Q  113 gtttatctcgtatatgatg 131  Q
    | |||||||||||||||||    
T  5439289 gcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
Q  20 gaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatc 119  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||  ||||| ||||||| |||||   ||||| |||| | ||||||||||| ||||    
T  5448794 gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc 5448893  T
Q  120 tcgtatatgatg 131  Q
    | ||||||||||    
T  5448894 tggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 2939094 - 2939216
Alignment:
Q  14 gatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtag 113  Q
    |||||||| |||||||||| |||||||||| || ||||||||||||||||||| |||  | ||||| | |||||   || ||||||||| ||| ||  |     
T  2939094 gatgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaa 2939193  T
Q  114 tttatctcgtatatgatgaacca 136  Q
    |||||||||||||||||||||||    
T  2939194 tttatctcgtatatgatgaacca 2939216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 5334363 - 5334437
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaa 87  Q
    ||||||||||||| |||||| ||||||| || |||||||||||||||||||||| |||||| ||||||| |||||    
T  5334363 agatgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaa 5334437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 5242427 - 5242371
Alignment:
Q  139 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaa 195  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  5242427 tgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaaa 5242371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 5352779 - 5352715
Alignment:
Q  139 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa 203  Q
    ||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||    
T  5352779 tgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 5352715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 23127406 - 23127306
Alignment:
Q  34 agtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaa 133  Q
    ||||||||||  |||||||||||||||| |||| || ||||| |||||||||||  ||||| ||||||| || |||  ||||||||| ||||||||||||    
T  23127406 agtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaa 23127307  T
Q  134 c 134  Q
    |    
T  23127306 c 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5352980 - 5352857
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| ||||||||||| | |||||||||||| || |||||| ||||||| || || ||| ||||||| |||||  ||||||| ||||| ||||||  |    
T  5352980 agatgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaaca 5352881  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
     ||||||| ||||||||| |||||    
T  5352880 atttatctggtatatgataaacca 5352857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 5253738 - 5253827
Alignment:
Q  40 aagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatga 129  Q
    |||||| |||||||| || ||||||||  | |||||||||||||||||||||||||||||||| | |||   |||||||||| |||||||    
T  5253738 aagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 5180719 - 5180643
Alignment:
Q  143 aagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    |||||||||||| ||||||| || | | | || |||||||||||||||||||||||||||| ||||| |||||||||    
T  5180719 aagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaat 5180643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5256220 - 5256113
Alignment:
Q  24 ggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgt 123  Q
    ||||||||| | |||||||||| ||||| |||||||||||||| |||||  |||||||  ||||   |||||||||||| ||||||| | ||||| | ||    
T  5256220 ggcagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggt 5256121  T
Q  124 atatgatg 131  Q
    ||||||||    
T  5256120 atatgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 5334453 - 5334515
Alignment:
Q  158 gaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa-cccgagcggaatgaat 219  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaagcctgagtggaatgaat 5334515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 5448965 - 5449019
Alignment:
Q  149 ttctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa 203  Q
    |||||||||||||| || ||| | |||||||||||||||||||||||||||||||    
T  5448965 ttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaagaaaa 5449019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 5124539 - 5124471
Alignment:
Q  34 agtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaa 102  Q
    |||||| ||||||||||||||||| ||||||||| | ||| |||||||| ||||| | |||||||||||    
T  5124539 agtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaa 5124471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 5283153 - 5283108
Alignment:
Q  174 atgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaat 5283108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 5155929 - 5155866
Alignment:
Q  139 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaa 202  Q
    ||||||||||||  || |||||| ||| |||| |||||||| |||||| |||||||||||||||    
T  5155929 tgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaaagaagaaa 5155866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 47985511 - 47985393
Alignment:
Q  12 gagatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagt 111  Q
    ||||||| |||||| |||| | |||||||||||||||||| |||||||||||||| || |||||||||||||||||  ||||||||||||| | || ||     
T  47985511 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47985412  T
Q  112 agtttatctcgtatatgat 130  Q
    ||||||||| |||||||||    
T  47985411 agtttatcttgtatatgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 48004085 - 48003967
Alignment:
Q  12 gagatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagt 111  Q
    ||||||| |||||| |||| | |||||||||||||||||| |||||||||||||| || |||||||||||||||||  ||||||||||||| | || ||     
T  48004085 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48003986  T
Q  112 agtttatctcgtatatgat 130  Q
    ||||||||| |||||||||    
T  48003985 agtttatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 47994798 - 47994680
Alignment:
Q  12 gagatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagt 111  Q
    ||||||| |||||| |||| | |||||||||||||||| | |||||||||||||| || |||||||||||||||||  ||||||||||||| | || ||     
T  47994798 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47994699  T
Q  112 agtttatctcgtatatgat 130  Q
    ||||||||| |||||||||    
T  47994698 agtttatcttgtatatgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 48013370 - 48013252
Alignment:
Q  12 gagatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagt 111  Q
    ||||||| |||||| |||| | |||||||||||||||| | |||||||||||||| || |||||||||||||||||  ||||||||||||| | || ||     
T  48013370 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48013271  T
Q  112 agtttatctcgtatatgat 130  Q
    ||||||||| |||||||||    
T  48013270 agtttatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 47985298 - 47985229
Alignment:
Q  150 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||  |||| |||||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaat 47985229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 47994585 - 47994516
Alignment:
Q  150 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||  |||| |||||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaat 47994516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 48003872 - 48003803
Alignment:
Q  150 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||  |||| |||||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaat 48003803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 48013157 - 48013088
Alignment:
Q  150 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaacccgagcggaatgaat 219  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||  |||| |||||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaat 48013088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 36213038 - 36212915
Alignment:
Q  13 agatgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagta 112  Q
    |||||| |||||||||||   |||||||||||||||||||||| | ||| |||| || ||||||||||||||||||| |||||||||||| |||||||      
T  36213038 agatgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcg 36212939  T
Q  113 gtttatctcgtatatgatgaacca 136  Q
     |||||||| | ||||||||||||    
T  36212938 atttatctcatttatgatgaacca 36212915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 4122739 - 4122638
Alignment:
Q  35 gtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaac 134  Q
    ||||||| ||| ||||||||| ||||||||||  | |||||||||||||  ||||||||||||||||  ||||||  |||||||||| ||||||||||||    
T  4122739 gtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaac 4122640  T
Q  135 ca 136  Q
    ||    
T  4122639 ca 4122638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 4132730 - 4132612
Alignment:
Q  15 atgaagaggggcagagggcagtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagt 114  Q
    |||| ||| ||||||| | |||||||| ||| ||||||||| ||||||| ||  |   ||||||||||| |||||||||||||||||  ||||||| |||    
T  4132730 atgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagat---tgttgtttttgggaacagtttcattgtgatgaagacagcagt 4132634  T
Q  115 ttatctcgtatatgatgaacca 136  Q
    ||||||| ||||||||||||||    
T  4132633 ttatctcatatatgatgaacca 4132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 4319385 - 4319296
Alignment:
Q  47 gaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaacca 136  Q
    ||||||||| |||| |||||  | ||||| ||||||| |||||||||||||||||  ||||||| |||||||||| ||||||||||||||    
T  4319385 gaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 4346575 - 4346664
Alignment:
Q  47 gaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaacca 136  Q
    ||||||||| ||||||||||  | ||||||||| | | ||||| | |||||||||  ||||||| |||||||||| ||||||||||||||    
T  4346575 gaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacca 4346664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 25569039 - 25569142
Alignment:
Q  34 agtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttga---gaacagtttcattgtgaaaaagacagtagtttatctcgtatatgat 130  Q
    ||||||||||||||||||||| ||||||||||| || ||| ||||||||||   |  ||||||||  ||||| || |||  ||||||||||||||| |||    
T  25569039 agtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatacgat 25569138  T
Q  131 gaac 134  Q
    ||||    
T  25569139 gaac 25569142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 4362753 - 4362853
Alignment:
Q  36 tatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaacc 135  Q
    |||||| ||| ||||||||| ||||||||||  | ||| ||||  | | ||||| | |||||||||  ||||||| |||||||||| |||||||||||||    
T  4362753 tatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaacc 4362852  T
Q  136 a 136  Q
    |    
T  4362853 a 4362853  T

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Target: scaffold1476 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 43 - 143
Alignment:
Q  36 tatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaacc 135  Q
    |||||||||||||||||||||| |||||||| || | |||||||| |||||||| |||||||||  |  ||||| |  ||||||||||||||||||||||    
T  43 tatcaagtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgtagagcagacattcctttatctcgtatatgatgaacc 142  T
Q  136 a 136  Q
    |    
T  143 a 143  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 22583396 - 22583296
Alignment:
Q  36 tatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaaaagacagtagtttatctcgtatatgatgaacc 135  Q
    |||||||||||||||||||||| |||||||| || | |||||||| |||||||| |||||||||  |  ||||| |  ||||||||||||||||||||||    
T  22583396 tatcaagtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgtagagcagacattcctttatctcgtatatgatgaacc 22583297  T
Q  136 a 136  Q
    |    
T  22583296 a 22583296  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 7973 - 7904
Alignment:
Q  34 agtatcaagtatagaacctggtaacaaagtggaagtcgttgttgtttttgagaacagtttcattgtgaaa 103  Q
    |||||||||| ||||||| || ||||||||||| || ||||||||||||| | || ||||||||| ||||    
T  7973 agtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaa 7904  T

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Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 7793 - 7741
Alignment:
Q  139 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaaca 191  Q
    |||||||||  ||| |||| |||||||||||||||| | ||||||||||||||    
T  7793 tgtcaagagtatctgtactcaagaggagcccactgaaggcttcaatcagaaca 7741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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