View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15268_low_1 (Length: 712)
Name: NF15268_low_1
Description: NF15268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15268_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-154; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 14693438 - 14693094
Alignment:
| Q |
19 |
gatacaatacgcagatgctagtgatgctacccttgttttcatgtattcagaatataatatatccaatatttatattgaatattagctctctttttacaat |
118 |
Q |
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| T |
14693438 |
gatacaatacgcagatgctagtgatgctagccttgttttcatgtattcagaatataatatatccaatatttatattgaatattagctctctttttacaat |
14693339 |
T |
|
| Q |
119 |
tagacttagattaccatgtaccatgccttcgttgtatatgcctccctgaattgttttccctgcgaggttattttccttacccctttatcattcagaatag |
218 |
Q |
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| T |
14693338 |
tagatttagattaccatgtaccatgccttcgtcgtatatgcctccctggattgttttccctgagaggttattttccttacccctttatcattcagaatgg |
14693239 |
T |
|
| Q |
219 |
agctaattattatacttcaatttcaactctagacatttcctatcaatatggagacaaataatcaaatcatgaataaaaggatgcagtaataacatcactc |
318 |
Q |
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| T |
14693238 |
agctaactattatacttcaatttcaactctagacatttcctatcaatatagagacaaatactctaatcatgaataaaaggatgtagtaataacatcactc |
14693139 |
T |
|
| Q |
319 |
cataagatattcatgtaacaggaacttggctaaaattatcagaaa |
363 |
Q |
| |
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||| |||||||||||||||| |||| | ||||||||||||||| |
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| T |
14693138 |
catgagatattcatgtaacaaatacttcgataaaattatcagaaa |
14693094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 495 - 615
Target Start/End: Complemental strand, 14692475 - 14692359
Alignment:
| Q |
495 |
gttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagta |
594 |
Q |
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| T |
14692475 |
gttagcacaaaagacttaaa----ctaataaacatgagctgaactatggttccatacagacaaaagaaaatttcacatcagacaaagacaagtaaaagtg |
14692380 |
T |
|
| Q |
595 |
tatacaagcatatggttttgc |
615 |
Q |
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||||||||||||||||||||| |
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| T |
14692379 |
tatacaagcatatggttttgc |
14692359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 50 - 330
Target Start/End: Complemental strand, 14685665 - 14685381
Alignment:
| Q |
50 |
cttgttttcatgtattcagaatataatatatccaatattta-tattgaatattagctctctttttacaattagacttagattaccatgtaccatgccttc |
148 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || ||| |||||||||||| || |||| |
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| T |
14685665 |
cttgttttcatgtgttcagaatataatatatccaatagttagtattgaatattagatctctttttactcaagga-ttatattaccatgtacaatacctta |
14685567 |
T |
|
| Q |
149 |
g------ttgtatatgcctccctgaattgtttt--ccctgcgaggttattttccttacccctttatcattcagaatagagctaattattatacttcaatt |
240 |
Q |
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| | | ||||||||||||| ||| |||| ||| ||| ||||||||| ||||||||||||||| || | ||||||| ||||| ||| ||| |
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| T |
14685566 |
gaaaccatcggatatgcctccctggatttttttttccccaagagattattttccctacccctttatcattgagggtggagctaactattacact---att |
14685470 |
T |
|
| Q |
241 |
tcaactctagacatttcctatcaatatggagacaaataatcaaatcatgaataaaaggatgcagtaataacatcactccataagatattc |
330 |
Q |
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| T |
14685469 |
tcaaatcta-acgtttcctatcaatatagagacaaatactcaaatcataaacaaaaggatgtagtaataacatcactccataagatattc |
14685381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 615
Target Start/End: Complemental strand, 14685229 - 14685117
Alignment:
| Q |
506 |
agacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaac----acaagtaaaagtatatacaa |
601 |
Q |
| |
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||||||||||||| |||||| |||||||| | |||||||| || |||||||||||||||||||||||| |||||| ||| |||||||| |||| || |
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| T |
14685229 |
agacttaaagaacgttataa-catgagctcagttatggttctatgcagacaaaagaaaatctcacatcaaacaaacaaagacatgtaaaagtgtatataa |
14685131 |
T |
|
| Q |
602 |
gcatatggttttgc |
615 |
Q |
| |
|
|||||||||||||| |
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|
| T |
14685130 |
gcatatggttttgc |
14685117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 14693074 - 14693015
Alignment:
| Q |
394 |
gcacaaaagacttggattaagaaacttataaacatgagctcatgagactagttcaaaagt |
453 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||| |
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| T |
14693074 |
gcacaaaagacttgaattaagaagcttataaacatgagctcaaaagactagtttaaaagt |
14693015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 703
Target Start/End: Complemental strand, 14692313 - 14692271
Alignment:
| Q |
661 |
gagcatatggttatgatacatgagcaactcaacatagaattat |
703 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
14692313 |
gagcatatgattatgatacatgatcaactcaacatagaattat |
14692271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 14685304 - 14685247
Alignment:
| Q |
364 |
aaataagagtatatggtacatgcatggttagcacaaaagacttggattaagaaactta |
421 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||||| ||| |||||||| |||| |
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| T |
14685304 |
aaataagagcatatggtacatacatggttagtacaaaaggcttaaattaagaacctta |
14685247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 226 - 615
Target Start/End: Complemental strand, 26938859 - 26938479
Alignment:
| Q |
226 |
tattatacttcaatttcaactctagacatttcctatcaatatggagacaaataatcaaatcatgaataaaaggatgcagtaataacatcactccataaga |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||| |||||| | |
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| T |
26938859 |
tattatacttcaatttcaactctagacatttcctatcaatatggagacaaacactctaatcatgaataaaaggatgtagtaataacatccctccat---a |
26938763 |
T |
|
| Q |
326 |
tattcatgtaacaggaacttggctaaaattatcagaaaaaataagagtatatggtacatgcatggttagcacaaaagacttggattaagaaacttataaa |
425 |
Q |
| |
|
||||||||||||||| ||||| || | | ||| |||||||||||| || |||| || ||| |||||||||||||||||| |||||||| ||||||| |
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|
| T |
26938762 |
tattcatgtaacaggctcttggatagcacttacag-aaaaataagagtgtacggtaaatacatagttagcacaaaagacttgaattaagaaggttataaa |
26938664 |
T |
|
| Q |
426 |
catgagctcatgagactagttcaaaagtta--gtggtgttcatgataatcataaatagaacatggttagcagttagcacaaaagacttaaagaaccttat |
523 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| || |
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|
| T |
26938663 |
catgagctcaaaagactagttgaaaagttagtgtggtgttcatgataatgataaatagaacgtggttagcag-------aaaagacttaaagaacctaat |
26938571 |
T |
|
| Q |
524 |
aaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagtatatacaagcatatggttttgc |
615 |
Q |
| |
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||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
26938570 |
aaatatgagctgaactatggttccataccgacaaaagaaaatctctcatcggacaaagacaagtaaaagtgtatacaaacatatggttttgc |
26938479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 703
Target Start/End: Complemental strand, 26938465 - 26938422
Alignment:
| Q |
660 |
cgagcatatggttatgatacatgagcaactcaacatagaattat |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26938465 |
cgagcatatggttatgatacatgagcaactcaacataaaattat |
26938422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 228 - 451
Target Start/End: Original strand, 26758985 - 26759223
Alignment:
| Q |
228 |
ttatacttcaatttcaactctagacatttcctatcaatatggagacaaataatcaaatcatgaataaaaggatgcagtaataacatcactccataagata |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||| ||| |
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|
| T |
26758985 |
ttatacttcaatttcaactctagacatttcctgacaatatggagacaaatactctaatcatgaataaaaggatgtagtaataacatcactgcataacata |
26759084 |
T |
|
| Q |
328 |
ttcatgtaacaggaacttggctaaaa-ttatcaga--------------aaaaataagagtatatggtacatgcatggttagcacaaaagacttggatta |
412 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||| | | |||||||||||||||||||| || |||||| ||||||||||||||| |||| |
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|
| T |
26759085 |
ttcatgtaataggcacttggataaaacttaacttaaacttaacttacagaaaaataagagtatatggtaaatacatggtaagcacaaaagacttgaatta |
26759184 |
T |
|
| Q |
413 |
agaaacttataaacatgagctcatgagactagttcaaaa |
451 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||| |||| |
|
|
| T |
26759185 |
agaaggttaaaaacatgagctcaaaagactagttgaaaa |
26759223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 412 - 615
Target Start/End: Original strand, 19814851 - 19815042
Alignment:
| Q |
412 |
aagaaacttataaacatgagctcatgagactagttcaaaagttagtg--gtgttcatgataatcataaatagaacatggttagcagttagcacaaaagac |
509 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||| || |||| |
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|
| T |
19814851 |
aagaagcttataaacatgagctcaaaagactagttgaaaagttagtgtggtgttcatgataat-------agaacatggttagcag-------aatagac |
19814936 |
T |
|
| Q |
510 |
ttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagtatatacaagcatatgg |
609 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||||||| |
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|
| T |
19814937 |
ttaaagaacctaataaacatgagctgaactatggttccattccgacaaaagaaaatctctcattagataaagacaagtaaaagtgtatacaaacatatgg |
19815036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 6508547 - 6508477
Alignment:
| Q |
42 |
atgctacccttgttttcatgtattcagaatataatatatccaatattta-tattgaatattagctctcttt |
111 |
Q |
| |
|
|||||| |||||||||||| |||| |||||||||| ||||| ||| ||| |||||||| |||||||||||| |
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|
| T |
6508547 |
atgctaaccttgttttcatatatttagaatataatgtatccgataattagtattgaatgttagctctcttt |
6508477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 6508237 - 6508143
Alignment:
| Q |
182 |
gaggttattttccttacccctttatcattcagaatagagctaattattatacttcaatttcaactctagacatttcctatcaatatggagacaaa |
276 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| || || |||| ||||| |||| || ||||| |||||| ||||| |||||||| |||||||| |
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|
| T |
6508237 |
gaggttgttttccctactcctttatcattcaagatggatctaactattacacttaaacttcaaatctagatatttcttatcaatagtgagacaaa |
6508143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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