View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15268_low_2 (Length: 523)
Name: NF15268_low_2
Description: NF15268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15268_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 52580608 - 52580116
Alignment:
| Q |
12 |
agtagcataggcgaagaaaagatggccgttaatgttactagctttcatatcaatttcaacagtgatgattcttttcatgagacctaacaattccgattca |
111 |
Q |
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| T |
52580608 |
agtagcattggcgaagaaaagatggccgttaatgttactagctttcatatcaatttcaacagtgatgattcttttcatgagacctaacaattccgattca |
52580509 |
T |
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| Q |
112 |
tgcaacacaacaaagaccttcgaagcacaacagagtcagattcatccctcctccgtcggaaatgcaccatctggtccaagccccttggatttcatgaaat |
211 |
Q |
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| T |
52580508 |
tgcaacacaacaaagaccttcgaagcacaacagagtcagattcatccctcctccgtcggaaatgcaccagctggtccaagccccttggatttcatgaaat |
52580409 |
T |
|
| Q |
212 |
cgaagcttgttctcatggtttcgcatgaactatctctttctggtggacctttacttttgatggaattggcgtttttgttgagaggtgttggttctgatgt |
311 |
Q |
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| T |
52580408 |
cgaagcttgttctcatggtttcgcatgaactatctctttctggtggacctttacttttgatggaattggcgtttttgttgagaggtgttggttctgatgt |
52580309 |
T |
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| Q |
312 |
tgtttggattacaaatcagtatcctgctgaacatgatcaggttatttatagtttagagagtaaaatgctggatagaggagttcaggtatatttctctttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
52580308 |
tgtttggattacaaatcagtatcctgctgaacatgatcaggttatttatagtttagagagtaaaatgctggacagaggagttcaggtatatttctc--tt |
52580211 |
T |
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| Q |
412 |
ctcttcgccttttcgtttcgatctttattgttgtttacttggttgannnnnnnagtgttaaattaatgctgcgtggaaatgttttaagaggtttg |
506 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580210 |
ctctttgccttttcgtttcgatctttattgttgtttacttggttgatttttttagtgttaaattaatgctgcgtggaaatgttttaagaggtttg |
52580116 |
T |
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