View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15268_low_4 (Length: 368)
Name: NF15268_low_4
Description: NF15268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15268_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 49009881 - 49009532
Alignment:
| Q |
1 |
atgttgttgttttggatttcatttgcaatggtaaatttcacatccacaatttaattgctcaaaagtctccgaacatagcctagaaaatgcacgaccatat |
100 |
Q |
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| T |
49009881 |
atgttgttgttttggatttcatttgcaatggtaaatttcacatccacaatttaattgctcaaaagtctccgaacatagcctagaaaatgcacgaccatat |
49009782 |
T |
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| Q |
101 |
ccttcctaattctactcaaaatgactctatttattggaagcattttgaatcaaatttgttcatctttaaaaatgtttttggttatttgaatcaaccttat |
200 |
Q |
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| T |
49009781 |
ccttcctaattctactcaaaatgactctatttattggaagcattttgaatcaaatttgttcatctttaaaaatgtttttggttatttgaatcaaccttat |
49009682 |
T |
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| Q |
201 |
ttgttggcctcctttgtttttacacgctttcaagagttctcttattgttccttagagccccagaagcaggaggcaaaattgcatatgtttaacaagggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
49009681 |
ttgttggcctcctttgtttttacacgctttcaagagttctcttattgttccttagagccctagaagcaggaggcaaaattgaatatgtttaacaagggac |
49009582 |
T |
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| Q |
301 |
atctatttctgtatatgtagagaagaaaattgttgtgcatgtcatttagc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49009581 |
atctatttctgtatatgtagagaagaaaattgttgtgcatgtcatttagc |
49009532 |
T |
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