View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15269_high_1 (Length: 850)
Name: NF15269_high_1
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15269_high_1 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 3705 - 3238
Alignment:
| Q |
17 |
cttagtacaaatccccacaatatagtggatagttttgttcgtcattaatacaattggtaccattaactttaattcttacttcgaaaaatccaaagaaaga |
116 |
Q |
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| T |
3705 |
cttagtacaaatccccacaatatagtcgatagttttgttcgtcattaatacaattggtaccattaactttaattcttacttc-aaaaatctaaagaaaga |
3607 |
T |
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| Q |
117 |
atttcacattttttggaaacctcctcgcgataattgtttgaagtttgttattgatagctctcatcgaactgttgataatcaactgcttttggtgtgttaa |
216 |
Q |
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| T |
3606 |
atttcacattttttggaaacctc-tcgcgataattgtttgaagtttgttattgacagctctcatcaaactgttgataatcaactgcttttggtgtgttaa |
3508 |
T |
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| Q |
217 |
ttagagacttcacaggttgtttgactaaaggatttcattgaaatttaggaaccgcta-tgttatatctaccgagctttgtggtctcaaccttggtttgaa |
315 |
Q |
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| T |
3507 |
ttagagactttacaggttgtttgactaagggatttcattgaaatttaggaacctctattgttatctctaccgagctttgtggtctcaaccttggtttgaa |
3408 |
T |
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| Q |
316 |
gctcgataaaatttatatatttgctctcttgtcgttgaagtagacccatcggttgttgttagactagtnnnnnnnggataccacatccatttttccaact |
415 |
Q |
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| T |
3407 |
gctcgatagaatttatatatttgctctcttgtcgttgaagtagacccatcggttgttgttagcctagtaaaaaaaggataccacaaccatatttccaact |
3308 |
T |
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| Q |
416 |
taattggaatccannnnnnnnatttcaactagcgaaaagatcgacactcgcgtgtctatctttccgctcttt |
487 |
Q |
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| T |
3307 |
taattggaatcctttttttttattccaactagcgaaaagacggacact--catgtctatctttccgctcttt |
3238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 516 - 776
Target Start/End: Complemental strand, 3014 - 2756
Alignment:
| Q |
516 |
acttattcaaacacattacgaaggctgattaattttatttcattcttatccatcggaataagtaaatcaaagatatacaaatactaggttttgtttgaca |
615 |
Q |
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| T |
3014 |
acttattcaaacacattacgaaggctgattaattttattgcattcttatccatcggaataaataaatcaaagatatacaaatactaggttttg-ttgaca |
2916 |
T |
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| Q |
616 |
tctttttgatgtcattgtaagcatcaatcatcaactaactcctgcaattaactttaagcctaatttacgcaagcttatcc----attaactattataatg |
711 |
Q |
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| T |
2915 |
tcttttttatgtcattgtaagcatcaatcatcaactaactcctgcaattaactttaagcc----ttatgcaagcttatccattaattaactattataatg |
2820 |
T |
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| Q |
712 |
aatattagaagacttctattaaattaaataagtctgatgatattttaattaaaaaatttagattt |
776 |
Q |
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| T |
2819 |
aatgttagaagacttctattaaattaaataagtctgatgata-tttaattaaaaaaattagattt |
2756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 443 - 489
Target Start/End: Original strand, 46866 - 46912
Alignment:
| Q |
443 |
actagcgaaaagatcgacactcgcgtgtctatctttccgctctttta |
489 |
Q |
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| T |
46866 |
actaacgaaaagatcgacactcacgtgtccatctttctgctctttta |
46912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 20296156 - 20296110
Alignment:
| Q |
442 |
aactagcgaaaagatcgacactcgcgtgtctatctttccgctctttt |
488 |
Q |
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| T |
20296156 |
aactagcgaaaagatggacactcacgtgtccatctttccgctatttt |
20296110 |
T |
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