View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15269_high_5 (Length: 375)
Name: NF15269_high_5
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15269_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 25 - 364
Target Start/End: Original strand, 30040034 - 30040361
Alignment:
| Q |
25 |
gcatttgatacaattagcaaaaggagggctcgatatcacttctttgataatgggaggctttggaggatgtatgttaatgttgaannnnnnnncaaaatga |
124 |
Q |
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||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30040034 |
gcatttgatccgattagcaataggagggctccatatcacttctttgataatgggaggctttggaggatgtatgttaatgttgaattttttttcaaaatga |
30040133 |
T |
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| Q |
125 |
ttaggtccctgacagatgagtttgaggcctttgaagtttaatccgcacgtttaatgtggacactctttgcaaagttgtgtgattgaagagccattgcaat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30040134 |
ttaggtccctgacagatgagtttgaggcctttgaagtttaatccgcacgtttaatgtggacactctttgcaaagttgtgtgattgaagagccattgcaat |
30040233 |
T |
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| Q |
225 |
ggatgcagagaatctctttggattattatgactatgctattatccctacctgttttaatgcaaaatgcacgcatctgaaagttacaaagctattcccttc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30040234 |
ggatgcagagaatctctttggattattatgactatgctattatccctacctgttttaatgcaaaatgcacgcatct------------gctattcccttc |
30040321 |
T |
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| Q |
325 |
gattcgtttctcaccctttttatgtagtgttcggtttcat |
364 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
30040322 |
gatttgtttctcaccctttttatgtagtgttcggtttcat |
30040361 |
T |
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