View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15269_low_10 (Length: 212)

Name: NF15269_low_10
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15269_low_10
NF15269_low_10
[»] chr7 (19 HSPs)
chr7 (1-194)||(20545129-20545322)
chr7 (63-138)||(5409772-5409847)
chr7 (75-138)||(21864863-21864926)
chr7 (56-138)||(1433495-1433577)
chr7 (74-138)||(15680863-15680927)
chr7 (63-138)||(9778548-9778623)
chr7 (64-138)||(32093955-32094030)
chr7 (63-138)||(43027405-43027480)
chr7 (69-138)||(2334309-2334378)
chr7 (10-54)||(8046060-8046104)
chr7 (91-138)||(40131940-40131987)
chr7 (74-138)||(3554447-3554511)
chr7 (74-138)||(21880206-21880270)
chr7 (91-138)||(6490787-6490834)
chr7 (56-115)||(21138955-21139014)
chr7 (81-138)||(7438778-7438835)
chr7 (74-138)||(18212974-18213038)
chr7 (21-57)||(35861957-35861993)
chr7 (63-134)||(43250046-43250118)
[»] chr2 (17 HSPs)
chr2 (56-138)||(41843482-41843564)
chr2 (56-138)||(34784912-34785000)
chr2 (74-137)||(2438661-2438724)
chr2 (81-138)||(18840954-18841011)
chr2 (81-138)||(26769583-26769640)
chr2 (74-138)||(42511323-42511387)
chr2 (91-138)||(41433222-41433269)
chr2 (11-57)||(21616745-21616791)
chr2 (1-54)||(27084235-27084288)
chr2 (85-138)||(28412422-28412475)
chr2 (56-138)||(35056909-35056997)
chr2 (85-138)||(37559042-37559095)
chr2 (74-138)||(24009349-24009413)
chr2 (20-60)||(26769503-26769543)
chr2 (74-138)||(28596523-28596587)
chr2 (81-138)||(35449568-35449627)
chr2 (74-138)||(37419808-37419872)
[»] chr1 (25 HSPs)
chr1 (56-137)||(1486646-1486727)
chr1 (81-138)||(9828116-9828173)
chr1 (56-138)||(34712324-34712401)
chr1 (73-138)||(41597411-41597476)
chr1 (1-57)||(1705022-1705078)
chr1 (74-138)||(22515828-22515892)
chr1 (74-138)||(37598885-37598949)
chr1 (74-138)||(47989562-47989626)
chr1 (11-57)||(398795-398841)
chr1 (11-57)||(6427333-6427379)
chr1 (11-57)||(12443490-12443536)
chr1 (81-134)||(5898211-5898264)
chr1 (20-57)||(9449038-9449075)
chr1 (20-57)||(10572619-10572656)
chr1 (20-57)||(22881646-22881683)
chr1 (11-56)||(40917734-40917779)
chr1 (1-57)||(1815230-1815286)
chr1 (11-51)||(9033044-9033084)
chr1 (1-57)||(14332672-14332727)
chr1 (20-60)||(17831558-17831598)
chr1 (74-138)||(22781496-22781560)
chr1 (17-57)||(24577216-24577256)
chr1 (112-140)||(28663689-28663717)
chr1 (1-57)||(32461493-32461549)
chr1 (20-56)||(37598824-37598860)
[»] chr6 (26 HSPs)
chr6 (58-138)||(17327591-17327671)
chr6 (74-136)||(32978842-32978904)
chr6 (74-138)||(10339055-10339119)
chr6 (63-138)||(9629437-9629512)
chr6 (56-126)||(3398659-3398729)
chr6 (20-57)||(10770704-10770741)
chr6 (56-138)||(18367877-18367965)
chr6 (20-57)||(21424832-21424869)
chr6 (74-138)||(4877997-4878060)
chr6 (1-57)||(7265623-7265679)
chr6 (17-57)||(10842521-10842561)
chr6 (14-57)||(2117062-2117105)
chr6 (56-138)||(34073279-34073365)
chr6 (11-57)||(853889-853935)
chr6 (23-57)||(7151407-7151441)
chr6 (63-137)||(12696372-12696446)
chr6 (11-56)||(8777004-8777049)
chr6 (20-57)||(16833300-16833337)
chr6 (81-138)||(24645542-24645599)
chr6 (20-57)||(34595126-34595163)
chr6 (74-138)||(3209453-3209517)
chr6 (21-57)||(7801186-7801222)
chr6 (74-138)||(8714045-8714109)
chr6 (74-138)||(17841530-17841594)
chr6 (5-57)||(17841619-17841671)
chr6 (74-138)||(34595188-34595252)
[»] chr5 (16 HSPs)
chr5 (56-138)||(39205921-39206003)
chr5 (56-138)||(14873558-14873640)
chr5 (63-138)||(31084371-31084446)
chr5 (81-135)||(30183621-30183675)
chr5 (63-127)||(15382527-15382592)
chr5 (74-138)||(27932289-27932353)
chr5 (1-57)||(39698514-39698570)
chr5 (1-57)||(42893333-42893389)
chr5 (75-138)||(21576686-21576749)
chr5 (87-138)||(38464314-38464365)
chr5 (81-138)||(7677777-7677834)
chr5 (20-57)||(17123040-17123077)
chr5 (81-138)||(17123109-17123165)
chr5 (74-135)||(36642696-36642756)
chr5 (1-57)||(10298542-10298598)
chr5 (76-137)||(18421779-18421844)
[»] chr8 (20 HSPs)
chr8 (57-138)||(16641910-16641991)
chr8 (1-57)||(15816159-15816215)
chr8 (74-138)||(22652041-22652105)
chr8 (75-138)||(6065587-6065650)
chr8 (83-138)||(11803333-11803388)
chr8 (3-57)||(5813567-5813621)
chr8 (81-138)||(8343388-8343445)
chr8 (1-54)||(12124081-12124134)
chr8 (81-138)||(18407780-18407837)
chr8 (8-56)||(24196628-24196676)
chr8 (74-138)||(36450695-36450759)
chr8 (8-47)||(126389-126428)
chr8 (5-56)||(36450785-36450836)
chr8 (63-137)||(44067569-44067644)
chr8 (89-138)||(13403175-13403224)
chr8 (20-57)||(27101507-27101544)
chr8 (1-57)||(30077417-30077474)
chr8 (74-138)||(29510234-29510298)
chr8 (13-57)||(31236607-31236651)
chr8 (74-138)||(34450962-34451026)
[»] chr3 (23 HSPs)
chr3 (1-57)||(18426922-18426978)
chr3 (63-138)||(27505294-27505369)
chr3 (1-54)||(23870592-23870645)
chr3 (74-138)||(40993276-40993340)
chr3 (60-138)||(5440968-5441047)
chr3 (56-138)||(8039765-8039853)
chr3 (81-138)||(20503526-20503583)
chr3 (78-146)||(15999943-16000011)
chr3 (1-57)||(27505219-27505275)
chr3 (74-138)||(35222992-35223056)
chr3 (74-138)||(55401129-55401193)
chr3 (29-127)||(6525635-6525738)
chr3 (91-138)||(10455867-10455914)
chr3 (14-57)||(11610507-11610550)
chr3 (11-57)||(12703990-12704036)
chr3 (11-57)||(14832082-14832128)
chr3 (11-57)||(14840321-14840367)
chr3 (23-56)||(1550135-1550168)
chr3 (20-57)||(10954944-10954981)
chr3 (69-137)||(24204983-24205052)
chr3 (20-57)||(34910309-34910346)
chr3 (1-57)||(45451528-45451582)
chr3 (81-137)||(4987222-4987278)
[»] scaffold0793 (1 HSPs)
scaffold0793 (79-138)||(4822-4881)
[»] chr4 (16 HSPs)
chr4 (79-138)||(715546-715605)
chr4 (79-138)||(752872-752931)
chr4 (74-138)||(23292927-23292991)
chr4 (63-138)||(3947702-3947777)
chr4 (74-137)||(4157203-4157266)
chr4 (74-137)||(4157490-4157553)
chr4 (54-140)||(14465004-14465090)
chr4 (1-51)||(22234927-22234977)
chr4 (81-143)||(29205529-29205591)
chr4 (20-57)||(36635316-36635353)
chr4 (74-138)||(28964189-28964253)
chr4 (80-138)||(3064869-3064927)
chr4 (63-138)||(12895056-12895127)
chr4 (81-146)||(30982800-30982865)
chr4 (20-57)||(32273556-32273593)
chr4 (81-138)||(35157926-35157983)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-57)||(14502-14559)
[»] scaffold0021 (1 HSPs)
scaffold0021 (23-138)||(2979-3096)
[»] scaffold0004 (2 HSPs)
scaffold0004 (74-139)||(92876-92941)
scaffold0004 (1-57)||(92780-92836)
[»] scaffold0019 (1 HSPs)
scaffold0019 (74-138)||(71790-71854)
[»] scaffold0450 (1 HSPs)
scaffold0450 (81-138)||(8565-8622)
[»] scaffold0227 (1 HSPs)
scaffold0227 (1-57)||(7341-7398)
[»] scaffold0652 (1 HSPs)
scaffold0652 (74-138)||(403-467)
[»] scaffold0512 (1 HSPs)
scaffold0512 (74-138)||(4977-5041)
[»] scaffold0136 (1 HSPs)
scaffold0136 (74-138)||(3779-3843)
[»] scaffold0122 (1 HSPs)
scaffold0122 (14-54)||(7996-8036)
[»] scaffold0103 (1 HSPs)
scaffold0103 (5-57)||(51788-51840)
[»] scaffold0036 (1 HSPs)
scaffold0036 (81-137)||(9678-9734)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20545322 - 20545129
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacattatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacac 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20545322 aagcacggatacggatacggacacgccaacaccgctaataatttgaaaaaatcacattatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacac 20545223  T
Q  101 ggggacacgtttaattcgaggagtgtctgtgcttcatatataactttgataccatcttagaatttaggtatgttatataactcaagcctattgt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20545222 ggggacacgtttaattcgaggagtgtctgtgcttcatatataactttgataccatcttagaatttaggtatgttatataactcaagcctattgt 20545129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 5409847 - 5409772
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  5409847 gtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 21864863 - 21864926
Alignment:
Q  75 tgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  21864863 tgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcata 21864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 1433495 - 1433577
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||  |||||||| |||| ||||||||||| ||||||||||    
T  1433495 attatatgtgtcggtgtcgtgtcggacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcata 1433577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 15680863 - 15680927
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||||||||| | ||||||| |||||||||||||||| ||||||||||    
T  15680863 gtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcata 15680927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 9778548 - 9778623
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||| |||| |||| |||||||||| ||||||||  |||| | ||||||||| ||||||||||    
T  9778548 gtgtcggtgtcgtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcata 9778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 32094030 - 32093955
Alignment:
Q  64 tgtcggtgtcgtgtcgtacacgacacatgtccgaca-cggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||||  |||| ||||||||||  ||||||||||    
T  32094030 tgtcggtgtcgtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcata 32093955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 43027480 - 43027405
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||  ||||||||| |||||||||| ||||||||  |||| ||| ||||||| ||||||||||    
T  43027480 gtgtcggtgtcgtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcata 43027405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 2334309 - 2334378
Alignment:
Q  69 gtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||| |||||||||||||||||||| |  |||||| |||| ||||||||||| ||| ||||||    
T  2334309 gtgtcgtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttcata 2334378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 8046104 - 8046060
Alignment:
Q  10 tacggatacggacacgccaacaccactaataatttgaaaaaatca 54  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  8046104 tacggatactgacacgccaacaccactaataatttgagaaaatca 8046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 40131987 - 40131940
Alignment:
Q  91 tgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  40131987 tgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcata 40131940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 3554511 - 3554447
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||| ||  |||| | ||||||| |||||||| ||||||||||||||||||    
T  3554511 gtgtcggacacgacacatatctaacactgagacacgtctaattcgaagagtgtctgtgcttcata 3554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 21880206 - 21880270
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||||||||||||  |||||||  |||| |||| |||||| ||||||||||    
T  21880206 gtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 6490787 - 6490834
Alignment:
Q  91 tgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  6490787 tgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcata 6490834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 21139014 - 21138955
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaat 115  Q
    |||||||||||||||||||||||| ||| || || ||||||||||  ||||||| |||||    
T  21139014 attatatgtgtcggtgtcgtgtcggacatgatacgtgtccgacaccaggacacgcttaat 21138955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 7438778 - 7438835
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||| ||||||  |||||||  |||||| ||||||||| ||||||||||    
T  7438778 acacgacacatgtgcgacactaggacacgcctaattcaaggagtgtccgtgcttcata 7438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 18213038 - 18212974
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||| | | || ||||||||||||||  | || ||||||||||||||||||||||    
T  18213038 gtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcata 18212974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 35861957 - 35861993
Alignment:
Q  21 acacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  35861957 acacgccgacacaactaataatttgaaaaaatcacat 35861993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 43250046 - 43250118
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacac-gacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgctt 134  Q
    |||||||||||| |||| |||| ||| | ||||||||||  |||||||  |||||||||||||||| ||||||    
T  43250046 gtgtcggtgtcgcgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 41843482 - 41843564
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||| |||||| || |||||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  41843482 attatatgtgtcggtgttgtgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcata 41843564  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 34785000 - 34784912
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgt------acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||||||       ||||||||| |||| ||||||||||||||  | |||||||||||||||||||||||||    
T  34785000 attatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcata 34784912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 2438724 - 2438661
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    |||||| |||||||||||||||||||| ||||||||  |||| ||||||||||| |||||||||    
T  2438724 gtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 18841011 - 18840954
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||||| |||||||   |||| ||||||||||| ||||||||||    
T  18841011 acacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 18840954  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 26769583 - 26769640
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||| |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  26769583 acacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 42511387 - 42511323
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||| |||| |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  42511387 gtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcata 42511323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 41433222 - 41433269
Alignment:
Q  91 tgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||| |  |||||||||||||||||||||| |||||||||||    
T  41433222 tgtccgacaccgaaacacgtttaattcgaggagtgtatgtgcttcata 41433269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21616745 - 21616791
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||    
T  21616745 acggacacggacacgccgacaccgctaataatttgagaaaatcacat 21616791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27084235 - 27084288
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatca 54  Q
    ||||||||||||||| |||||||| || ||||  |||||||||||| |||||||    
T  27084235 aagcacggatacggacacggacactccgacactgctaataatttgagaaaatca 27084288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 28412422 - 28412475
Alignment:
Q  85 gacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| |||||||||| ||||||||  |||||||||||| ||| ||||||||||    
T  28412422 gacacgtgtccgacactgggacacggctaattcgaggagcgtcagtgcttcata 28412475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 35056909 - 35056997
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgt------acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||||||       ||||||||| ||||||||||||  |||||  ||||  |||||||||| ||||||||||    
T  35056909 attatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcata 35056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 37559042 - 37559095
Alignment:
Q  85 gacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| |||||||||| || ||||| ||||| ||||||||||| ||||||||||    
T  37559042 gacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcata 37559095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 24009349 - 24009413
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||| ||||||||||||||  | || | ||||||||| ||||||||||    
T  24009349 gtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 24009413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 26769503 - 26769543
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacattat 60  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  26769503 gacacgccgacacaactaataatttgaaaatatcacattat 26769543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 28596523 - 28596587
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| ||||||||||  ||||||   |||| ||||||||||| ||||||||||    
T  28596523 gtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 35449568 - 35449627
Alignment:
Q  81 acacgacacatgtccgacacggggacacgttt--aattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||  | |||||| |  ||| ||||||||||||||||||||||    
T  35449568 acacgacacatgtccgacaccagaacacgtctctaatccgaggagtgtctgtgcttcata 35449627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 37419808 - 37419872
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||  | |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  37419808 gtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 1486727 - 1486646
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||  |||| |||||||||||||||||||||    
T  1486727 attataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 9828116 - 9828173
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||| |||||||||| ||||||||| |||| ||||||||||| ||||||||||    
T  9828116 acacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 9828173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 34712401 - 34712324
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||| |||||||||||     ||||| ||||| |||| ||||||||| |||||| ||||||||| ||||||||||    
T  34712401 attatatgtgtcagtgtcgtgtcg-----gacacgtgtcctacactgggacacgtctaattcaaggagtgtccgtgcttcata 34712324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 41597476 - 41597411
Alignment:
Q  73 cgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||| ||||||||| |||| |||||||||| ||| || || | ||||||||||||||||||||    
T  41597476 cgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcata 41597411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1705078 - 1705022
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| || ||||| || ||||  |||||||||||||||||||||||    
T  1705078 aagcacggatacggacaccgacacaccgacacatctaataatttgaaaaaatcacat 1705022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 22515892 - 22515828
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||| |||||||| | ||||||  |||| ||||||||||| ||||||||||    
T  22515892 gtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 22515828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 37598885 - 37598949
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||||||||  ||||||||  |||| ||||||||||| ||||||||||    
T  37598885 gtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcata 37598949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 47989562 - 47989626
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||||||| ||||  ||||||||  |||| ||||||||||| ||||||||||    
T  47989562 gtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcata 47989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 398841 - 398795
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| || |||||||| ||||| |||||||||||||||||||||||    
T  398841 acggacactgacacgccgacaccgctaataatttgaaaaaatcacat 398795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 6427333 - 6427379
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| || |||||||||||||| |||||||||||| ||||||||||    
T  6427333 acggacactgacacgccaacaccgctaataatttgagaaaatcacat 6427379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 12443536 - 12443490
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||||    
T  12443536 acggatacggacacgccgacacagctaataatttgagaaaatcacat 12443490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 5898264 - 5898211
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgctt 134  Q
    ||||||||| ||||| |||| ||||||||| |||| ||||||||||| ||||||    
T  5898264 acacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctt 5898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 9449075 - 9449038
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  9449075 gacacaccaacaccattaataatttgaaaaaatcacat 9449038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 10572656 - 10572619
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  10572656 gacacgccgacaccactaataatttgagaaaatcacat 10572619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 22881683 - 22881646
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  22881683 gacacgccgacacaactaataatttgaaaaaatcacat 22881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 40917734 - 40917779
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcaca 56  Q
    |||||||| |||||||| ||||  ||||||||||||||||||||||    
T  40917734 acggatactgacacgccgacacagctaataatttgaaaaaatcaca 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1815230 - 1815286
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| || |||||||| |||| | |||| |||| ||||||||||||    
T  1815230 aagcacggatacggacactgacacgccgacacaaataattattttaaaaaatcacat 1815286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 9033084 - 9033044
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaa 51  Q
    ||||| || |||||| |||||||||||||||||||||||||    
T  9033084 acggacactgacacgtcaacaccactaataatttgaaaaaa 9033044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14332727 - 14332672
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||| ||||| ||| ||| ||| |||||||||||||||||| ||||||||||    
T  14332727 aagcacggaaacggacacg-acatgcccacaccactaataatttgagaaaatcacat 14332672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 17831598 - 17831558
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacattat 60  Q
    |||||||| ||||| |||||||||||| |||||||||||||    
T  17831598 gacacgccgacaccgctaataatttgagaaaatcacattat 17831558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 22781496 - 22781560
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| | ||||||| | |||||||| | |||||||||||||| |||||| | |||||||||||    
T  22781496 gtgtcggatacgacacgtatccgacaccgagacacgtttaattcaaggagtatatgtgcttcata 22781560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 24577256 - 24577216
Alignment:
Q  17 acggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||  |||| ||||||||||||||||||||||||    
T  24577256 acggacacgctgacacaactaataatttgaaaaaatcacat 24577216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 28663689 - 28663717
Alignment:
Q  112 taattcgaggagtgtctgtgcttcatata 140  Q
    |||||||||||||||||||||||||||||    
T  28663689 taattcgaggagtgtctgtgcttcatata 28663717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32461549 - 32461493
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||||| || |  ||||||||  ||| ||||||||||||||||||||||||    
T  32461549 aagcacggatacagacagtgacacgccggcacaactaataatttgaaaaaatcacat 32461493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 37598824 - 37598860
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcaca 56  Q
    |||||||| |||| |||||||||||||||||||||||    
T  37598824 gacacgccgacacaactaataatttgaaaaaatcaca 37598860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 17327671 - 17327591
Alignment:
Q  58 tatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||| ||||||||||| ||||||||||    
T  17327671 tatatgtgtcagtgtcgtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcata 17327591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 32978904 - 32978842
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttca 136  Q
    |||||| |||||||||||||||||||| ||||||||| |||| | ||||||||| ||||||||    
T  32978904 gtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 10339119 - 10339055
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||||||||||||| ||||||||  ||||  |||||||||| ||||||||||    
T  10339119 gtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcata 10339055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 9629437 - 9629512
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||| |||| |||  |||||||||| | ||||||| |||| |||||||||||  |||||||||    
T  9629437 gtgtcggtgtcgtgtcggacacaacatgtgtccgacactgagacacgtctaatccgaggagtgtccatgcttcata 9629512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 3398659 - 3398729
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgt 126  Q
    |||||| || |||||||||||| | |||||||||||||||||||| || |||||| ||||  |||||||||    
T  3398659 attataagtatcggtgtcgtgttggacacgacacatgtccgacaccggaacacgtctaatcagaggagtgt 3398729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 10770741 - 10770704
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10770741 gacacgccaacacaactaataatttgaaaaaatcacat 10770704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 18367877 - 18367965
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgt------acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||  | || | ||||||||| ||||||||||    
T  18367877 attatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 18367965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 21424869 - 21424832
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21424869 gacacgccaacaccgctaataatttgaaaaaatcacat 21424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 4877997 - 4878060
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||||||||||||  |||||||  |||| ||||||||||| ||||||||||    
T  4877997 gtgtcggacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcata 4878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7265679 - 7265623
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||| || |||| || |||||||||||||| |||||||||||| ||||||||||    
T  7265679 aagcacgtattcggacactgacacgccaacaccgctaataatttgagaaaatcacat 7265623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 10842521 - 10842561
Alignment:
Q  17 acggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  10842521 acggacacgccgacaccgctaataatttgaaaaaatcacat 10842561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 2117062 - 2117105
Alignment:
Q  14 gatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||| || ||||| |||||||||||||||||||||||    
T  2117062 gatacggacactccgacacctctaataatttgaaaaaatcacat 2117105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 34073365 - 34073279
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcg-----tacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||| |||||||||||||||     |||||||||  || ||||||| ||||||| | |||||||||||||||| ||||||||||    
T  34073365 attatatgggtcggtgtcgtgtcggtgtctacacgacatgtg-ccgacaccgggacacctctaattcgaggagtgtccgtgcttcata 34073279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 853935 - 853889
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||| | |||||||| |||| ||||||||||||||||||||||||    
T  853935 acggatgctgacacgccgacacaactaataatttgaaaaaatcacat 853889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 7151407 - 7151441
Alignment:
Q  23 acgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||| |||||||||||||||||||||||    
T  7151407 acgccaacacctctaataatttgaaaaaatcacat 7151441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 12696372 - 12696446
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    ||||| ||||||||||| ||||||||| |||| ||||| |||||||   | || | |||||||||||||||||||    
T  12696372 gtgtcagtgtcgtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 8777049 - 8777004
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcaca 56  Q
    ||||| || |||||||| |||| |||||||||||||||||||||||    
T  8777049 acggacactgacacgccgacacaactaataatttgaaaaaatcaca 8777004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 16833300 - 16833337
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  16833300 gacacgccgacacaactaataatttgaaaaaatcacat 16833337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 24645542 - 24645599
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||| ||||||||||   ||||||| |||| ||| ||||||||||||||||||    
T  24645542 acacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcata 24645599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34595126 - 34595163
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  34595126 gacacgccgacacaactaataatttgaaaaaatcacat 34595163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 3209453 - 3209517
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||  |||||||||  |||||||  |||| |||||||||| |||||||||||    
T  3209453 gtgtcgaacacgacacgcgtccgacacccggacacgcctaatccgaggagtgtttgtgcttcata 3209517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 7801222 - 7801186
Alignment:
Q  21 acacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  7801222 acacgccgacacaactaataatttgaaaaaatcacat 7801186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 8714045 - 8714109
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||| |||||||  ||||||||   ||| |||||||||||| |||||||||    
T  8714045 gtgtcggacacgacacatttccgacatcgggacacgcccaatccgaggagtgtctttgcttcata 8714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 17841594 - 17841530
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||  |||||||||| | ||||||  |||| ||||||||||| ||||||||||    
T  17841594 gtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 17841671 - 17841619
Alignment:
Q  5 acggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| ||||| || |||||||| ||||  |||||||||||||||||||||||    
T  17841671 acggacacggacactgacacgccgacacagctaataatttgaaaaaatcacat 17841619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 34595188 - 34595252
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||| ||||| |||||||   |||| ||||||||||| ||||||||||    
T  34595188 gtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcata 34595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 39205921 - 39206003
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||| |||||||||||  ||||||||| || ||||||| |||| ||||||||| | |||||||||| |||||||||    
T  39205921 attatatgtgttggtgtcgtgtccgacacgacacgtgcccgacaccgggatacgtttaatccaaggagtgtctatgcttcata 39206003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 14873558 - 14873640
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||| ||||| || | |||| ||||| |||| ||||||||  |||| ||||||||||| ||||||||||    
T  14873558 attatatgtgtcggtgtcatgtcggacgcaacacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcata 14873640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 31084371 - 31084446
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||| ||||||||| |||||||||| |||||| |  |||| ||||||||||| ||| ||||||    
T  31084371 gtgtcgatgtcgtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcata 31084446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 30183621 - 30183675
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttc 135  Q
    ||||||||| |||||||||| ||||||||  ||||||||| ||||||||||||||    
T  30183621 acacgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 15382527 - 15382592
Alignment:
Q  63 gtgtcggtgtcg-tgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtc 127  Q
    |||||||||||| ||| | |||||||||||||||||||| ||||||||  |||| |||||||||||    
T  15382527 gtgtcggtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtc 15382592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 27932289 - 27932353
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||| |||||  |||||||  ||||||||||||||| |||||||||||    
T  27932289 gtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcata 27932353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39698514 - 39698570
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| || |||||||  ||||  |||||||||||||||||||||||    
T  39698514 aagcacggatacggacactgacacgctgacacagctaataatttgaaaaaatcacat 39698570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42893333 - 42893389
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||| ||| |||||||| || ||||  |||||||||||||||||||||||    
T  42893333 aagcacggatatggacacggacacaccgacacagctaataatttgaaaaaatcacat 42893389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 21576749 - 21576686
Alignment:
Q  75 tgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| ||||||||| |||| ||||| ||||||||  |||| ||||||||||| ||||||||||    
T  21576749 tgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcata 21576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 38464365 - 38464314
Alignment:
Q  87 cacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||| |||||||   |||| ||||||||||||||||||||||    
T  38464365 cacatgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcata 38464314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 7677777 - 7677834
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| |||||||||||||| ||||||||  |||| ||||||| ||| ||||||||||    
T  7677777 acacgtcacatgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcata 7677834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 17123040 - 17123077
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  17123040 gacacgccaacaccgctaataatttgagaaaatcacat 17123077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 17123109 - 17123165
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||||||||| |||||  |||| ||||||||||| ||||||||||    
T  17123109 acacgaaacatgtccgacacggg-acacgcctaatccgaggagtgtccgtgcttcata 17123165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 36642756 - 36642696
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttc 135  Q
    |||||| ||||||||| |||||||||| ||||||||  ||||| |||||||||| |||||||    
T  36642756 gtgtcggacacgacacgtgtccgacac-gggacacgcctaattggaggagtgtcggtgcttc 36642696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10298542 - 10298598
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||| |||| ||  ||||||| |||| ||||||||||||||||| ||||||    
T  10298542 aagcacggatgcggacactaacacgccgacacaactaataatttgaaaaagtcacat 10298598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 18421844 - 18421779
Alignment:
Q  76 gtcgtacacgacacatgtccgacacggggac----acgtttaattcgaggagtgtctgtgcttcat 137  Q
    |||| |||||||||||||||| ||| |||||    |||| |||| |||||||||||||||||||||    
T  18421844 gtcggacacgacacatgtccggcaccgggactgacacgtctaatccgaggagtgtctgtgcttcat 18421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 16641991 - 16641910
Alignment:
Q  57 ttatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||||| ||||||||  ||||  |||| |||||||   |||| ||||||||||||||||||||||    
T  16641991 ttatatgtgtcggtgtcgtgtcggacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcata 16641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15816215 - 15816159
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| ||||||||| || |||||||| |||| ||||||||||||||||||||||||    
T  15816215 aagcatggatacggacactgacacgccgacacaactaataatttgaaaaaatcacat 15816159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 22652041 - 22652105
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||  |||||||||| ||||||||| |||| ||||||||||| ||||||||||    
T  22652041 gtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 22652105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 6065650 - 6065587
Alignment:
Q  75 tgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| |||||||||||||||||||| || |||||  |||||| ||||||||| ||||||||||    
T  6065650 tgtcggacacgacacatgtccgacaccggaacacgcataattcaaggagtgtccgtgcttcata 6065587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 11803333 - 11803388
Alignment:
Q  83 acgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||| || |||||| |||| ||||||||||| ||||||||||    
T  11803333 acgacacatgtccgacacaggtacacgtctaatccgaggagtgtccgtgcttcata 11803388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 5813567 - 5813621
Alignment:
Q  3 gcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||| ||||||||||| ||||  |||||||||||||||| ||||||    
T  5813567 gcacggatacggacacggacacgccgacacagctaataatttgaaaaagtcacat 5813621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 8343388 - 8343445
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||| |||||||||| ||||||||  |||| ||| ||||||||||||||||||    
T  8343388 acacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12124081 - 12124134
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatca 54  Q
    |||||||||||| || ||||||| ||||||||| |||||||||||| |||||||    
T  12124081 aagcacggatacagacacggacaagccaacaccgctaataatttgagaaaatca 12124134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 18407780 - 18407837
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||  |||||||  ||||| |||||||||| ||||||||||    
T  18407780 acacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcata 18407837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 24196676 - 24196628
Alignment:
Q  8 gatacggatacggacacgccaacaccactaataatttgaaaaaatcaca 56  Q
    |||||||| || |||||||| |||| |||||||||||||||||||||||    
T  24196676 gatacggacaccgacacgccgacacaactaataatttgaaaaaatcaca 24196628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 36450759 - 36450695
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||| | ||||||||||  |||||||  |||| ||||||||||||||||||||||    
T  36450759 gtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 126428 - 126389
Alignment:
Q  8 gatacggatacggacacgccaacaccactaataatttgaa 47  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  126428 gatacggatactgacacgccaacaccgctaataatttgaa 126389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 36450836 - 36450785
Alignment:
Q  5 acggatacggatacggacacgccaacaccactaataatttgaaaaaatcaca 56  Q
    ||||| ||||| || |||||||| |||| |||||||||||||||||||||||    
T  36450836 acggacacggacactgacacgccgacacaactaataatttgaaaaaatcaca 36450785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 44067569 - 44067644
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacac-gacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    ||||||||||||||||| |||| ||  | ||||||||||  |||||||  |||||||||||||||| |||||||||    
T  44067569 gtgtcggtgtcgtgtcggacactgatgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 13403175 - 13403224
Alignment:
Q  89 catgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||| | |||||| ||||||| ||||||||| ||||||||||    
T  13403175 catgtccgacaccgagacacgcttaattcaaggagtgtccgtgcttcata 13403224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 27101507 - 27101544
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  27101507 gacacgccgacaccgctaataatttgaaaaaatcacat 27101544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30077474 - 30077417
Alignment:
Q  1 aagcacggatac-ggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||||| ||| |||||||||||||| |  ||||||||||||||| |||||||    
T  30077474 aagcacggatactggacacggacacgccaacgcagctaataatttgaaaacatcacat 30077417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 29510298 - 29510234
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||| | |||||||||| |||||||   |||| ||||||||||| ||||||||||    
T  29510298 gtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 29510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 31236651 - 31236607
Alignment:
Q  13 ggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| ||||  |||||||||||| ||||||||||    
T  31236651 ggatacggacacgccgacactgctaataatttgagaaaatcacat 31236607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 34451026 - 34450962
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||| ||||||||||||||  | || | ||||||||| ||||||||||    
T  34451026 gtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 34450962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18426922 - 18426978
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  18426922 aagcacagatacggacacggacacgccgacaccactaataatttcaaaaaatcacat 18426978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 27505294 - 27505369
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||  ||||||||| |||||||||| |||||| |  |||| ||||||||||| ||||||||||    
T  27505294 gtgtcggtgtcgtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23870645 - 23870592
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatca 54  Q
    ||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  23870645 aagcacggatacggacacggacacgtcgacaccgctaataatttgaaaaaatca 23870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 40993340 - 40993276
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||||||||||||| ||||||||  |||| |||||||||||  |||||||||    
T  40993340 gtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcata 40993276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 5441047 - 5440968
Alignment:
Q  60 tatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacac-gtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||| |||||  ||||||||||||||| |||| | ||||| |  |||||||||||||||| ||||||||||    
T  5441047 tatgtgtcggtgttgtgtcagacacgacacatgtccaacaccgagacacggcctaattcgaggagtgtccgtgcttcata 5440968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 8039853 - 8039765
Alignment:
Q  56 attatatgtgtcggtgtcgtgtcgt------acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||||||||       ||| || ||||||||||||| |||||||| ||||| ||| |||| |||||||||||||    
T  8039853 attatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcata 8039765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 20503526 - 20503583
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||| ||||| ||||||||  |||| ||||||||||| ||||||||||    
T  20503526 acacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 20503583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 16000011 - 15999943
Alignment:
Q  78 cgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcatatataactt 146  Q
    |||||||||||| |||||||||| ||||||||  |||| | ||||||||| |||| ||||||| |||||    
T  16000011 cgtacacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcatataaaactt 15999943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27505219 - 27505275
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||  |||||||||||    
T  27505219 aagcacggatacggatacggacaagccgacacagctaataatttttaaaaatcacat 27505275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 35222992 - 35223056
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||| ||||| |||| |||||||||||||| || || ||||||||||| ||||||||||    
T  35222992 gtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcata 35223056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 55401129 - 55401193
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||||||||| | ||||||  |||| ||||||||||| ||||||||||    
T  55401129 gtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 55401193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 6525738 - 6525635
Alignment:
Q  29 acaccactaataatttgaaaaaatcac-----attatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggag 123  Q
    ||||| |||||||||||| ||||||||     ||||||| |||||||||||||| | |||| |||||||||||| || | |||||   |||| |||||||    
T  6525738 acaccgctaataatttgagaaaatcacgcataattatatatgtcggtgtcgtgttggacacaacacatgtccgataccgagacacacctaatccgaggag 6525639  T
Q  124 tgtc 127  Q
    ||||    
T  6525638 tgtc 6525635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 10455867 - 10455914
Alignment:
Q  91 tgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||| |||||||||||||| | |||||||| |||||||||||    
T  10455867 tgtccgacactgggacacgtttaatccaaggagtgtatgtgcttcata 10455914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 11610507 - 11610550
Alignment:
Q  14 gatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||    
T  11610507 gatactgacacgccaacaccgctaataatttaaaaaaatcacat 11610550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 12703990 - 12704036
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  12703990 acggatatggacacgccgacaccactaataatttgagaaaagcacat 12704036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14832082 - 14832128
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||    
T  14832082 acggatacggacacgccgatacagctaataatttgaaaaaatcacat 14832128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 14840367 - 14840321
Alignment:
Q  11 acggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  14840367 acggataccgacacgccaacaccattaataatttcagaaaatcacat 14840321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 1550135 - 1550168
Alignment:
Q  23 acgccaacaccactaataatttgaaaaaatcaca 56  Q
    ||||||||||| ||||||||||||||||||||||    
T  1550135 acgccaacaccgctaataatttgaaaaaatcaca 1550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 10954944 - 10954981
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  10954944 gacacgccgacacaactaataatttgaaaaaatcacat 10954981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 24205052 - 24204983
Alignment:
Q  69 gtgtcgtgtcgtacac-gacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    ||||||||||| |||| ||| | ||||||||||  |||||||  |||||||||||||||| |||||||||    
T  24205052 gtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34910309 - 34910346
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  34910309 gacacgccgacacaactaataatttgaaaaaatcacat 34910346  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45451528 - 45451582
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| |||||||||  |||||  |||||||||||| ||||||||||    
T  45451528 aagcacggatacggacacggacacg--aacactgctaataatttgagaaaatcacat 45451582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 4987278 - 4987222
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    ||||||||| |||||||||| ||||||||  |||| ||||||||||| || ||||||    
T  4987278 acacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

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Target: scaffold0793 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 4881 - 4822
Alignment:
Q  79 gtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  4881 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 4822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 715605 - 715546
Alignment:
Q  79 gtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  715605 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 752931 - 752872
Alignment:
Q  79 gtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||||||||||||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  752931 gtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 752872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 23292991 - 23292927
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  23292991 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 3947777 - 3947702
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||| ||||||||||| ||||||||| ||||||||||  ||||||   |||| ||||||||||| ||||||||||    
T  3947777 gtgtcagtgtcgtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 4157203 - 4157266
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    |||||| |||||||||||||||||||| | || ||   ||||||||||||||||||||||||||    
T  4157203 gtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 4157490 - 4157553
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    |||||| |||||||||||||||||||| | || |||  ||||||||||||||||| ||||||||    
T  4157490 gtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtctatgcttcat 4157553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 14465090 - 14465004
Alignment:
Q  54 acattatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcatata 140  Q
    |||||| | ||||| ||| ||||||  ||||||||| ||| |||||| ||||||||| ||||  |||||||||| ||||||||||||    
T  14465090 acattacaagtgtcagtgccgtgtcagacacgacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcatata 14465004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22234977 - 22234927
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaa 51  Q
    ||||||||||||||| ||||||||||| ||||| |||| ||||||||||||    
T  22234977 aagcacggatacggacacggacacgccgacaccgctaaaaatttgaaaaaa 22234927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 29205529 - 29205591
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcatatataa 143  Q
    |||||||||||||||||||| ||||||||  |||| ||||||||||  |||||||||| ||||    
T  29205529 acacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagataa 29205591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 36635316 - 36635353
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36635316 gacacgccaacaccactaataatttgagaaaatcacat 36635353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 28964253 - 28964189
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||||| |||||||| ||||||||  |||| |||||||||||  |||||||||    
T  28964253 gtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcata 28964189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 3064927 - 3064869
Alignment:
Q  80 tacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||||| | | ||||||  |||| ||||||||||| ||||||||||    
T  3064927 tacacgacacatgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcata 3064869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 12895127 - 12895056
Alignment:
Q  63 gtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||||| |||||||||    ||||||| |||| |||  |||||||| ||||||| ||||||||||    
T  12895127 gtgtcggtgtcgtgtcggacacgacac----ccgacaccgggatacgcctaattcgaagagtgtccgtgcttcata 12895056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 30982865 - 30982800
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcatatataactt 146  Q
    ||||||||| |||||||||| ||||||||  |||| | | ||||||| ||||||||||| ||||||    
T  30982865 acacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcatatgtaactt 30982800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 32273593 - 32273556
Alignment:
Q  20 gacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  32273593 gacacgccaacacaactaataatttgaaaaaataacat 32273556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 35157983 - 35157926
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    ||||||||||||||| |||| || ||||| ||||| |||| |||||| ||||||||||    
T  35157983 acacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcata 35157926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14502 - 14559
Alignment:
Q  1 aagcacggatacggatac-ggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||    
T  14502 aagcacggatacggacaccggacacgccgacacaactaataatttgaaaaaatcacat 14559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 3096 - 2979
Alignment:
Q  23 acgccaacaccactaataatttgaaaaaatcacat---tatatgtgtcggtgtcgtgtcgtacacgacacatgtccgacacggggacacgtttaattcga 119  Q
    ||||| ||||| ||| |||||||  ||||||||||   ||||||||| |||||||||||| |||||||||||||||||||| |  |||||  ||||  |     
T  3096 acgccgacaccgctattaatttgtgaaaatcacataattatatgtgtaggtgtcgtgtcg-acacgacacatgtccgacactgaaacacgcctaatatgg 2998  T
Q  120 ggagtgtctgtgcttcata 138  Q
    |||||||| ||||||||||    
T  2997 ggagtgtccgtgcttcata 2979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 92876 - 92941
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcatat 139  Q
    |||||| |||||||||||||| |||||  |||||||  |||| ||||||||||| |||||||||||    
T  92876 gtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcatat 92941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 92780 - 92836
Alignment:
Q  1 aagcacggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||||||||||||| || |||||||| ||||| |||||||||||| ||||| ||||    
T  92780 aagcacggatacggacactgacacgccgacaccgctaataatttgagaaaattacat 92836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 71790 - 71854
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||| |||| |||||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  71790 gtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcata 71854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 8622 - 8565
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| || |||||||||| || |||||  |||||||||||||||| ||||||||||    
T  8622 acacgatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcata 8565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7398 - 7341
Alignment:
Q  1 aagcacggatacggatac-ggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    |||||||||||| || || ||||||||| |||| |||||||||||| |||||||||||    
T  7398 aagcacggatacagacaccggacacgccgacacaactaataatttggaaaaatcacat 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 467 - 403
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||| | |||||||||| |||||||   |||| ||||||||||| ||||||||||    
T  467 gtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 5041 - 4977
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| ||||||||| |||||||||  | |||| |  |||| ||||||||||||||||||||||    
T  5041 gtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcata 4977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 3843 - 3779
Alignment:
Q  74 gtgtcgtacacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 138  Q
    |||||| |||||||||||||||||||  | ||||||  |||| |||||||||||  |||||||||    
T  3843 gtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcata 3779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 7996 - 8036
Alignment:
Q  14 gatacggacacgccaacaccactaataatttgaaaaaatca 54  Q
    ||||| |||||||| |||| |||||||||||||||||||||    
T  7996 gatacagacacgccgacacaactaataatttgaaaaaatca 8036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 51788 - 51840
Alignment:
Q  5 acggatacggatacggacacgccaacaccactaataatttgaaaaaatcacat 57  Q
    ||||| ||||| || |||||||| ||||  |||||||||||||||||||||||    
T  51788 acggacacggacactgacacgccgacacagctaataatttgaaaaaatcacat 51840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 9734 - 9678
Alignment:
Q  81 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcat 137  Q
    ||||||||| |||| ||||  ||||||||| |||| ||||||||||| |||||||||    
T  9734 acacgacacttgtctgacatcgggacacgtataatccgaggagtgtccgtgcttcat 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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