View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15269_low_2 (Length: 495)
Name: NF15269_low_2
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15269_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 62 - 484
Target Start/End: Original strand, 8138981 - 8139395
Alignment:
| Q |
62 |
ctatttgatctctatttcgaatgctaagnnnnnnnntaatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatctaattgttt- |
160 |
Q |
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| T |
8138981 |
ctatttgatctctatttcgaatgctaagaaaaaaaataatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatctaattgtttt |
8139080 |
T |
|
| Q |
161 |
atgtatgcactatcagttaatacatggctgactttggaatgatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139081 |
atgtatgcactatcagttaatacatggctgactttggaattatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttt |
8139180 |
T |
|
| Q |
261 |
tttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatc |
360 |
Q |
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| T |
8139181 |
tttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatc |
8139280 |
T |
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| Q |
361 |
atttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcact |
460 |
Q |
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| T |
8139281 |
atttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatgcttgaatatcact |
8139371 |
T |
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| Q |
461 |
gtttttggaacgatgtctctgctc |
484 |
Q |
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| T |
8139372 |
gtttttggaatgatgtctctgctc |
8139395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 303 - 484
Target Start/End: Complemental strand, 7499701 - 7499529
Alignment:
| Q |
303 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
402 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt |
7499603 |
T |
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| Q |
403 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc |
484 |
Q |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctc |
7499529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
250 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
346 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
347 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
385 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 7499845 - 7499722
Alignment:
| Q |
98 |
taatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctg |
190 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
7499845 |
taatgggaaaaattattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctg |
7499746 |
T |
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| Q |
191 |
actttggaatgatgtctcagtttt |
214 |
Q |
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||| |||||||||||||||||| |
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| T |
7499745 |
gttttagaatgatgtctcagtttt |
7499722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
428 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
478 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
343 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
384 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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