View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15269_low_3 (Length: 480)

Name: NF15269_low_3
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15269_low_3
NF15269_low_3
[»] chr1 (16 HSPs)
chr1 (294-464)||(48109865-48110035)
chr1 (154-193)||(5496545-5496584)
chr1 (154-193)||(7013052-7013091)
chr1 (154-193)||(17606263-17606302)
chr1 (154-193)||(21790750-21790789)
chr1 (154-193)||(39848894-39848933)
chr1 (154-193)||(47374860-47374899)
chr1 (154-193)||(5216561-5216600)
chr1 (154-193)||(10716949-10716988)
chr1 (154-193)||(14886846-14886885)
chr1 (154-193)||(21791498-21791537)
chr1 (154-193)||(46284754-46284793)
chr1 (154-193)||(46285563-46285602)
chr1 (154-192)||(16959504-16959542)
chr1 (154-192)||(29858923-29858961)
chr1 (154-191)||(5497304-5497341)
[»] chr3 (17 HSPs)
chr3 (11-130)||(22259405-22259524)
chr3 (118-190)||(22259545-22259617)
chr3 (83-192)||(5531898-5532002)
chr3 (154-193)||(20200625-20200664)
chr3 (154-193)||(20202809-20202848)
chr3 (154-193)||(47167887-47167926)
chr3 (154-193)||(53950094-53950133)
chr3 (126-193)||(54584869-54584935)
chr3 (154-192)||(30834448-30834486)
chr3 (154-192)||(53949330-53949368)
chr3 (154-190)||(20199870-20199906)
chr3 (154-193)||(11238516-11238555)
chr3 (154-193)||(53948660-53948699)
chr3 (154-192)||(47169174-47169212)
chr3 (129-186)||(22258853-22258909)
chr3 (154-186)||(30833688-30833720)
chr3 (154-190)||(43400785-43400821)
[»] chr4 (11 HSPs)
chr4 (24-190)||(4899415-4899576)
chr4 (136-193)||(550318-550375)
chr4 (154-193)||(29212008-29212047)
chr4 (154-193)||(41695384-41695423)
chr4 (154-193)||(45919511-45919550)
chr4 (128-193)||(13387761-13387825)
chr4 (154-193)||(41696137-41696176)
chr4 (154-193)||(46619644-46619683)
chr4 (155-193)||(4157780-4157818)
chr4 (154-192)||(21825164-21825202)
chr4 (136-193)||(4900130-4900186)
[»] chr7 (16 HSPs)
chr7 (123-186)||(4962374-4962437)
chr7 (154-193)||(3162869-3162908)
chr7 (154-193)||(8487029-8487068)
chr7 (154-193)||(8512704-8512743)
chr7 (154-193)||(8513480-8513519)
chr7 (154-193)||(30469512-30469551)
chr7 (154-193)||(31179935-31179974)
chr7 (154-193)||(38059847-38059886)
chr7 (154-193)||(3163514-3163553)
chr7 (154-193)||(8487825-8487864)
chr7 (154-193)||(30659855-30659894)
chr7 (154-189)||(43742724-43742759)
chr7 (154-193)||(46428135-46428174)
chr7 (158-192)||(43334131-43334165)
chr7 (156-189)||(3219308-3219341)
chr7 (156-189)||(21415413-21415446)
[»] chr8 (5 HSPs)
chr8 (142-193)||(39861657-39861707)
chr8 (154-193)||(5881143-5881182)
chr8 (154-193)||(25128586-25128625)
chr8 (154-193)||(42986646-42986685)
chr8 (154-188)||(5332190-5332224)
[»] scaffold0009 (2 HSPs)
scaffold0009 (154-193)||(105510-105549)
scaffold0009 (154-193)||(106306-106345)
[»] chr6 (9 HSPs)
chr6 (154-193)||(19651071-19651110)
chr6 (154-193)||(19653881-19653920)
chr6 (154-193)||(8992907-8992946)
chr6 (154-193)||(8993601-8993640)
chr6 (154-193)||(9017354-9017393)
chr6 (154-193)||(9018048-9018087)
chr6 (154-193)||(18153258-18153297)
chr6 (154-193)||(18649915-18649954)
chr6 (154-191)||(9280909-9280946)
[»] chr5 (8 HSPs)
chr5 (154-193)||(21145936-21145975)
chr5 (154-193)||(23206211-23206250)
chr5 (154-193)||(42521708-42521747)
chr5 (154-191)||(21148114-21148151)
chr5 (152-193)||(42520617-42520658)
chr5 (154-192)||(42520448-42520486)
chr5 (141-193)||(11768841-11768893)
chr5 (154-186)||(42519647-42519679)
[»] chr2 (7 HSPs)
chr2 (154-193)||(122971-123010)
chr2 (154-193)||(4776993-4777032)
chr2 (154-193)||(19386935-19386974)
chr2 (154-193)||(42849515-42849554)
chr2 (154-193)||(8911853-8911892)
chr2 (154-193)||(39629531-39629570)
chr2 (142-193)||(44926641-44926691)
[»] scaffold0301 (1 HSPs)
scaffold0301 (154-191)||(20732-20769)
[»] scaffold0853 (1 HSPs)
scaffold0853 (154-193)||(615-654)
[»] scaffold0188 (1 HSPs)
scaffold0188 (154-193)||(25614-25653)
[»] scaffold0155 (1 HSPs)
scaffold0155 (154-193)||(998-1037)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 294 - 464
Target Start/End: Complemental strand, 48110035 - 48109865
Alignment:
Q  294 gttttagataggttgattatcttttatttttgcgaggttttcatagtggataattagcaactgattaaaaaatgatacattagtccaaaacaccactcgt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48110035 gttttagataggttgattatcttttatttttgcgaggttttcatagtggataattagcaactgattaaaaaatgatacattagtccaaaacaccactcgt 48109936  T
Q  394 tatttctttactactataaccataagaaacatcacgttatcttgatttcagtgaatggtagtagtggtttc 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48109935 tatttctttactactataaccataagaaacatcacgttatcttgatttcagtgaatggtagtagtggtttc 48109865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 5496584 - 5496545
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5496584 aaatttaatttgacaccttggtgtcatttgatcctatccc 5496545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 7013052 - 7013091
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  7013052 aaatttaatttgacaccttggtgtcatttgatcctatccc 7013091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 17606302 - 17606263
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  17606302 aaatttaatttgacaccttggtgtcatttgatcctatccc 17606263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 21790789 - 21790750
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  21790789 aaatttaatttgacaccttggtgtcatttgatcctatccc 21790750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 39848894 - 39848933
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  39848894 aaatttaatttgacaccttggtgtcatttgatcctatccc 39848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 47374860 - 47374899
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  47374860 aaatttaatttgacaccttggtgtcatttgatcctatccc 47374899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 5216600 - 5216561
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  5216600 aaatttaatttgacaccatggtgtcatttgatcctatccc 5216561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 10716949 - 10716988
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  10716949 aaatttaatttgacaccttggtgtcatttgatcttatccc 10716988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 14886846 - 14886885
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  14886846 aaatttaatttgacaccatggtgtcatttgatcctatccc 14886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 21791498 - 21791537
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  21791498 aaatttaatttgacaccatggtgtcatttgatcctatccc 21791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 46284793 - 46284754
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  46284793 aaatttaatttgacactttggtgtcatttgatcctatccc 46284754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 46285563 - 46285602
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  46285563 aaatttaatttgacaccttggtgtcatttgatcatatccc 46285602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 16959542 - 16959504
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  16959542 aaatttaatttgacaccttggtgttatttgatcctatcc 16959504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 29858961 - 29858923
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  29858961 aaatttaatttgacatcttggtgtcatttgatcctatcc 29858923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 5497304 - 5497341
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatc 191  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  5497304 aaatttaatttgacaccttggtatcatttgatcctatc 5497341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 22259405 - 22259524
Alignment:
Q  11 agaaaatagggaataaattaggaaagttgaaatattattatttagaaagcaagtttagattctcatgtcacatgaggattaagtgactaattataaacct 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  22259405 agaaaatagggaataaattaggaaagttgaaatattattctttagaaagcaagttcagattctcatgtcacatgaggattaagtgactaattataaatct 22259504  T
Q  111 ttagatcaaataaaataaaa 130  Q
    ||||||||||||||||||||    
T  22259505 ttagatcaaataaaataaaa 22259524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 22259545 - 22259617
Alignment:
Q  118 aaataaaataaaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctat 190  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||| ||| ||||||||||||    
T  22259545 aaataaaataaaacaaaaggttgagatttggtgtcaaaatttaatttgacaccttgatgttatttgatcctat 22259617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 5531898 - 5532002
Alignment:
Q  83 tgaggattaagtgactaattataaacctttagatcaaataaaataaaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcattt 182  Q
    ||||||||| |||| |||||||||| |||||||| ||||     |||||||| || ||||||||| ||| ||||||||||| || | ||| |||||||||    
T  5531898 tgaggattaggtgattaattataaatctttagatgaaat-----aaaataaagggatgagatttggtgtcaaaatttaattcgacatcttagtgtcattt 5531992  T
Q  183 gatcctatcc 192  Q
    ||||||||||    
T  5531993 gatcctatcc 5532002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 20200625 - 20200664
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  20200625 aaatttaatttgacaccttggtgtcatttgatcctatccc 20200664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 20202809 - 20202848
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  20202809 aaatttaatttgacaccttggtgtcatttgatcctatccc 20202848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 47167926 - 47167887
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  47167926 aaatttaatttgacaccttggtgtcatttgatcctatccc 47167887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 53950094 - 53950133
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  53950094 aaatttaatttgacaccttggtgtcatttgatcctatccc 53950133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 54584869 - 54584935
Alignment:
Q  126 taaaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||| | |||| ||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||    
T  54584869 taaaatagatggttaagatttgatgttaaa-tttagtttgacaccatggtgtcatttgatcctatccc 54584935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 30834448 - 30834486
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  30834448 aaatttaatttgataccttgatgtcatttgatcctatcc 30834486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 53949330 - 53949368
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  53949330 aaatttaatttgacaccttggtgtcatttgatcctatcc 53949368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 20199906 - 20199870
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctat 190  Q
    ||||||||||||| |||||||||||||||||||||||    
T  20199906 aaatttaatttgacaccttggtgtcatttgatcctat 20199870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 11238555 - 11238516
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  11238555 aaatttaatttgacaccttgatgtcatttgatcctatccc 11238516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 53948699 - 53948660
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  53948699 aaatttaatttgacaccatggtgtcatttgatcctatccc 53948660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 47169174 - 47169212
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  47169174 aaatttaatttgacaccttggtgtcatttgatcttatcc 47169212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 22258909 - 22258853
Alignment:
Q  129 aataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatc 186  Q
    |||||| |||||||||||||||| || ||| ||||||| || ||||||||||||||||    
T  22258909 aataaatggttgagatttgatgtcaagatt-aatttgacacattggtgtcatttgatc 22258853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 30833720 - 30833688
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatc 186  Q
    ||||||||||||| |||||||||||||||||||    
T  30833720 aaatttaatttgacaccttggtgtcatttgatc 30833688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 43400785 - 43400821
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctat 190  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  43400785 aaatttaatttgacaccatggtgtcatttgatcctat 43400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 4899576 - 4899415
Alignment:
Q  24 taaattaggaaagttgaaatattattatttagaaagcaagtttagattctcatgtcacatgaggattaagtgactaattataaacctttagatcaaataa 123  Q
    ||||||||| ||||||| |||||||| ||||||| |||| |  | ||| ||||||||||||| |||||||||||||||||||||||||| ||||     |    
T  4899576 taaattaggtaagttgagatattattctttagaaggcaattgcaaattttcatgtcacatgatgattaagtgactaattataaacctttggatc-----a 4899482  T
Q  124 aataaaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctat 190  Q
    |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||    
T  4899481 aatataataaaaggttgagatttggtgtcaaaatttaatttgacaccttggtggcatttgatcctat 4899415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 550318 - 550375
Alignment:
Q  136 ggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||| ||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||    
T  550318 ggttaagatttgatgtcaaaatttagtttgacaccatggtgtcatttgatcctatccc 550375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 29212047 - 29212008
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29212047 aaatttaatttgacaccttggtgtcatttgatcctatccc 29212008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 41695423 - 41695384
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  41695423 aaatttaatttgacaccttggtgtcatttgatcctatccc 41695384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 45919550 - 45919511
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  45919550 aaatttaatttgacaccttggtgtcatttgatcctatccc 45919511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 13387761 - 13387825
Alignment:
Q  128 aaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||| |||||||||||| |||||||| ||||||||| | |||||||||| |||||| ||||||    
T  13387761 aaataaagggttgagatttggtgttaaaa-ttaatttgacatcttggtgtcaattgatcatatccc 13387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 41696137 - 41696176
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  41696137 aaatttaatttgacaccttggtatcatttgatcctatccc 41696176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 46619644 - 46619683
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  46619644 aaatttaatttgacaccttggtgtcatttgatcatatccc 46619683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 4157818 - 4157780
Alignment:
Q  155 aatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  4157818 aattaaatttgacaccttggtgtcatttgatcctatccc 4157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 21825164 - 21825202
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  21825164 aaatttaatttgacaccatggtgtcatttgatcctatcc 21825202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 4900130 - 4900186
Alignment:
Q  136 ggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||||||||||| ||| || ||| ||||||| |||||||||||||||||||| |||||    
T  4900130 ggttgagatttggtgtcaagatt-aatttgacaccttggtgtcatttgatcccatccc 4900186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 4962437 - 4962374
Alignment:
Q  123 aaataaaataaaaggttgagatttgatgttaaaatttaatttgataccttggtgtcatttgatc 186  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  4962437 aaatataataaaaggttgagatttggtgtcaaaatttaatttgacaccttggtgtcatttgatc 4962374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 3162908 - 3162869
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  3162908 aaatttaatttgacaccttggtgtcatttgatcctatccc 3162869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 8487068 - 8487029
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8487068 aaatttaatttgacaccttggtgtcatttgatcctatccc 8487029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 8512743 - 8512704
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8512743 aaatttaatttgacaccttggtgtcatttgatcctatccc 8512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 8513480 - 8513519
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8513480 aaatttaatttgacaccttggtgtcatttgatcctatccc 8513519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 30469551 - 30469512
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  30469551 aaatttaatttgacaccttggtgtcatttgatcctatccc 30469512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 31179935 - 31179974
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31179935 aaatttaatttgacaccttggtgtcatttgatcctatccc 31179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 38059886 - 38059847
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  38059886 aaatttaatttgacaccttggtgtcatttgatcctatccc 38059847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 3163514 - 3163553
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  3163514 aaatttaatttgacaccatggtgtcatttgatcctatccc 3163553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 8487825 - 8487864
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  8487825 aaatttaatttgacaccttcgtgtcatttgatcctatccc 8487864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 30659894 - 30659855
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  30659894 aaatttaatttgacaccatggtgtcatttgatcctatccc 30659855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 43742759 - 43742724
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatccta 189  Q
    |||||||||||||||||||| |||||||||||||||    
T  43742759 aaatttaatttgataccttgatgtcatttgatccta 43742724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 46428135 - 46428174
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  46428135 aaatttaatttgacaccatggtgtcatttgatcctatccc 46428174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 43334165 - 43334131
Alignment:
Q  158 ttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||| |||||||||||||||||||||||||    
T  43334165 ttaatttgacaccttggtgtcatttgatcctatcc 43334131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 3219341 - 3219308
Alignment:
Q  156 atttaatttgataccttggtgtcatttgatccta 189  Q
    ||||||||||| ||||||||||||||||||||||    
T  3219341 atttaatttgacaccttggtgtcatttgatccta 3219308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 21415413 - 21415446
Alignment:
Q  156 atttaatttgataccttggtgtcatttgatccta 189  Q
    ||||||||||| ||||||||||||||||||||||    
T  21415413 atttaatttgacaccttggtgtcatttgatccta 21415446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 39861657 - 39861707
Alignment:
Q  142 gatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  39861657 gatttgatgttaaa-tttaatttgacaccttggtgtcatttgatcctatccc 39861707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 5881182 - 5881143
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5881182 aaatttaatttgacaccttggtgtcatttgatcctatccc 5881143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 25128625 - 25128586
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  25128625 aaatttaatttgacaccttggtgtcatttgatcttatccc 25128586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 42986685 - 42986646
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  42986685 aaatttaatttgacactttggtgtcatttgatcctatccc 42986646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 5332190 - 5332224
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcct 188  Q
    ||||||||||||| |||||||||||||||||||||    
T  5332190 aaatttaatttgacaccttggtgtcatttgatcct 5332224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 105549 - 105510
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  105549 aaatttaatttgacaccttggtgtcatttgatcctatccc 105510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 106306 - 106345
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  106306 aaatttaatttgacaccttggtgtcatttgatcatatccc 106345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 19651110 - 19651071
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  19651110 aaatttaatttgacaccttggtgtcatttgatcctatccc 19651071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 19653881 - 19653920
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  19653881 aaatttaatttgacaccttggtgtcatttgatcctatccc 19653920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 8992946 - 8992907
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  8992946 aaatttaatttgacaccatggtgtcatttgatcctatccc 8992907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 8993601 - 8993640
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  8993601 aaatttaatttgacaccgtggtgtcatttgatcctatccc 8993640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 9017393 - 9017354
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  9017393 aaatttaatttgacaccatggtgtcatttgatcctatccc 9017354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 9018048 - 9018087
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  9018048 aaatttaatttgacaccgtggtgtcatttgatcctatccc 9018087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 18153297 - 18153258
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  18153297 aaatttaatttgacactttggtgtcatttgatcctatccc 18153258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 18649915 - 18649954
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  18649915 aaatttaatttgacaccatggtgtcatttgatcctatccc 18649954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 9280909 - 9280946
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatc 191  Q
    ||||||||||||| || |||||||||||||||||||||    
T  9280909 aaatttaatttgacacattggtgtcatttgatcctatc 9280946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 21145975 - 21145936
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  21145975 aaatttaatttgacaccttggtgtcatttgatcctatccc 21145936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 23206211 - 23206250
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  23206211 aaatttaatttgacaccttggtgtcatttgatcctatccc 23206250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 42521708 - 42521747
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  42521708 aaatttaatttgacaccttggtgtcatttgatcctatccc 42521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 21148114 - 21148151
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatc 191  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21148114 aaatttaatttgacaccttggtgtcatttgatcctatc 21148151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 42520658 - 42520617
Alignment:
Q  152 taaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  42520658 taaaatttaatatgacaccttggtgtcatttgatcctatccc 42520617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 42520448 - 42520486
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatcc 192  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  42520448 aaatttaatttgacaccttggtgttatttgatcctatcc 42520486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 11768893 - 11768841
Alignment:
Q  141 agatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||| ||| |||||||| ||||| ||| || |||||||||||||||||||    
T  11768893 agatttggtgtcaaaatttagtttgacaccatgatgtcatttgatcctatccc 11768841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 42519679 - 42519647
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatc 186  Q
    ||||||||||||| |||||||||||||||||||    
T  42519679 aaatttaatttgacaccttggtgtcatttgatc 42519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 122971 - 123010
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  122971 aaatttaatttgacaccttggtgtcatttgatcctatccc 123010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 4776993 - 4777032
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4776993 aaatttaatttgacaccttggtgtcatttgatcctatccc 4777032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 19386935 - 19386974
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  19386935 aaatttaatttgataccttggtgtaatttgatcctatccc 19386974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 42849515 - 42849554
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  42849515 aaatttaatttgacaccttggtgtcatttgatcctatccc 42849554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 8911853 - 8911892
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  8911853 aaatttaatttgacaccatggtgtcatttgatcctatccc 8911892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 39629531 - 39629570
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  39629531 aaatttaatttgacaccttggtgtcatttgatcatatccc 39629570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 44926691 - 44926641
Alignment:
Q  142 gatttgatgttaaaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    |||||||||| |||||||||||||| |||||| |||||||||||| ||||||    
T  44926691 gatttgatgt-aaaatttaatttgacaccttgatgtcatttgatcatatccc 44926641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 20769 - 20732
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatc 191  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20769 aaatttaatttgacaccttggtgtcatttgatcctatc 20732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 654 - 615
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  654 aaatttaatttgacacattggtgtcatttgatcctatccc 615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 25653 - 25614
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  25653 aaatttaatttgacacattggtgtcatttgatcctatccc 25614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 1037 - 998
Alignment:
Q  154 aaatttaatttgataccttggtgtcatttgatcctatccc 193  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  1037 aaatttaatttgacactttggtgtcatttgatcctatccc 998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University