View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15269_low_4 (Length: 376)
Name: NF15269_low_4
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15269_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 43092098 - 43092447
Alignment:
| Q |
17 |
cacttttccctgtgttgttagcaacatattcatcgttaaaaataatttcataagattgaacatcactgcacacacacgaaagcacaactgataaaatatc |
116 |
Q |
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| T |
43092098 |
cacttttccctgtgttgttagcaacatattcatcgttaaaaataaattcataagattgaacatcactgcacacacacgaaaacacaactgacaaaatatc |
43092197 |
T |
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| Q |
117 |
ggccattttaaaaatcagagcagttaacaggagtgaaattttctttaaggatacaatttgagcaacacacgttgttatcactgccagaatagacaagaaa |
216 |
Q |
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| T |
43092198 |
ggccattttaaaaaccatagcagttaacaggagtgaaattttctttaaggatacaatttgagcaacacatgttgttatcactgccagaaaagacaagaaa |
43092297 |
T |
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| Q |
217 |
gagcccaacgcattgagttgtaaatcagtgattgttgcaattccaacacccaaaagttggattacaagagaaaattgggttcttctactgcagttacaaa |
316 |
Q |
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| T |
43092298 |
gagcccaacgcattgagttgtaaatcagtgattgttgcaattccaacacccaaaagtaggattacaagagaaaattgggttcttctactgcatttacaaa |
43092397 |
T |
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| Q |
317 |
aacaagagaatagtcaatacaattgaaattgtttacaagtccttcctttg |
366 |
Q |
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| T |
43092398 |
aacaagagaacagtcaatacaattgaaattgtttacaagtccttcctttg |
43092447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 43084703 - 43084811
Alignment:
| Q |
160 |
tttaaggatacaatttgagcaacacacgttgttatcactgccagaatagacaagaaagagcccaacgcattgagttgtaaatcagtgattgttgcaattc |
259 |
Q |
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| T |
43084703 |
tttaaggatacaatctgagcaacacatgttgtaatcaccgccagaagagataagaaagatcccagagcattcaactgcaaatctgtgactgttgcaattc |
43084802 |
T |
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| Q |
260 |
caacaccca |
268 |
Q |
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| T |
43084803 |
caacaccca |
43084811 |
T |
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