View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15269_low_8 (Length: 318)

Name: NF15269_low_8
Description: NF15269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15269_low_8
NF15269_low_8
[»] chr7 (41 HSPs)
chr7 (95-308)||(30774887-30775100)
chr7 (1-77)||(1565784-1565860)
chr7 (1-77)||(1738502-1738578)
chr7 (1-77)||(7240748-7240824)
chr7 (1-77)||(38063968-38064044)
chr7 (1-77)||(46840859-46840935)
chr7 (1-76)||(23314194-23314269)
chr7 (1-76)||(31319454-31319529)
chr7 (1-82)||(7482219-7482300)
chr7 (1-77)||(9268755-9268831)
chr7 (1-77)||(28536806-28536882)
chr7 (1-76)||(36583395-36583470)
chr7 (5-77)||(22285698-22285770)
chr7 (1-76)||(94373-94448)
chr7 (5-76)||(36016255-36016326)
chr7 (1-76)||(38441460-38441535)
chr7 (1-78)||(4790246-4790323)
chr7 (151-241)||(33194720-33194810)
chr7 (5-60)||(33418392-33418447)
chr7 (1-77)||(9575408-9575484)
chr7 (2-70)||(40840175-40840243)
chr7 (30-82)||(7240833-7240885)
chr7 (30-82)||(7482309-7482361)
chr7 (30-77)||(1738446-1738493)
chr7 (30-77)||(9268840-9268887)
chr7 (30-76)||(22285783-22285829)
chr7 (30-76)||(23314139-23314185)
chr7 (30-76)||(38441544-38441590)
chr7 (30-76)||(46840944-46840990)
chr7 (30-79)||(4790332-4790381)
chr7 (30-83)||(28536744-28536797)
chr7 (30-70)||(33418460-33418500)
chr7 (30-85)||(94309-94364)
chr7 (30-77)||(36583479-36583526)
chr7 (30-77)||(38063912-38063959)
chr7 (30-69)||(40840126-40840165)
chr7 (30-76)||(31319399-31319445)
chr7 (44-84)||(3411449-3411489)
chr7 (32-76)||(9575495-9575539)
chr7 (151-239)||(11740386-11740474)
chr7 (30-66)||(36016206-36016242)
[»] chr8 (49 HSPs)
chr8 (1-83)||(54667-54749)
chr8 (1-83)||(43199409-43199491)
chr8 (1-77)||(2890217-2890293)
chr8 (1-77)||(7785833-7785909)
chr8 (1-77)||(7805754-7805830)
chr8 (1-76)||(3304333-3304408)
chr8 (1-76)||(6552655-6552730)
chr8 (1-76)||(12343195-12343270)
chr8 (1-76)||(32114530-32114605)
chr8 (1-76)||(44498242-44498317)
chr8 (1-78)||(12763709-12763786)
chr8 (1-77)||(25601055-25601131)
chr8 (1-77)||(32211418-32211494)
chr8 (1-76)||(15888407-15888482)
chr8 (1-76)||(31654613-31654688)
chr8 (1-76)||(39571258-39571333)
chr8 (1-77)||(33289316-33289392)
chr8 (1-76)||(7012171-7012246)
chr8 (14-77)||(4245649-4245712)
chr8 (1-77)||(13578856-13578932)
chr8 (8-73)||(28463614-28463679)
chr8 (1-76)||(8587170-8587245)
chr8 (22-83)||(27422266-27422327)
chr8 (30-78)||(43199352-43199400)
chr8 (30-77)||(54611-54658)
chr8 (30-77)||(2890161-2890208)
chr8 (30-77)||(7785777-7785824)
chr8 (30-77)||(25600999-25601046)
chr8 (152-219)||(39534164-39534231)
chr8 (30-77)||(39571202-39571249)
chr8 (30-76)||(6552739-6552785)
chr8 (30-76)||(33289261-33289307)
chr8 (152-242)||(39065560-39065649)
chr8 (32-77)||(32211362-32211407)
chr8 (30-70)||(12343146-12343186)
chr8 (43-82)||(6899413-6899452)
chr8 (30-77)||(7012255-7012302)
chr8 (30-77)||(7805698-7805745)
chr8 (154-245)||(10029156-10029247)
chr8 (30-77)||(12763653-12763700)
chr8 (151-222)||(37919416-37919487)
chr8 (30-77)||(44498186-44498233)
chr8 (30-76)||(3304278-3304324)
chr8 (19-69)||(13246801-13246851)
chr8 (5-71)||(17006916-17006982)
chr8 (5-71)||(17570265-17570331)
chr8 (30-76)||(31654697-31654743)
chr8 (8-77)||(24692040-24692109)
chr8 (32-77)||(32114474-32114519)
[»] chr5 (40 HSPs)
chr5 (1-83)||(37149010-37149092)
chr5 (1-76)||(9395350-9395425)
chr5 (1-80)||(23359938-23360017)
chr5 (1-82)||(582983-583064)
chr5 (1-77)||(20848073-20848149)
chr5 (1-77)||(36563593-36563669)
chr5 (1-77)||(41989462-41989538)
chr5 (1-76)||(11795168-11795243)
chr5 (5-77)||(13033050-13033122)
chr5 (5-77)||(13103023-13103095)
chr5 (1-76)||(26350405-26350480)
chr5 (1-77)||(17025623-17025699)
chr5 (1-83)||(37641946-37642029)
chr5 (5-77)||(4443959-4444031)
chr5 (5-77)||(38361750-38361822)
chr5 (5-52)||(21575970-21576017)
chr5 (1-69)||(13539922-13539986)
chr5 (152-243)||(14863333-14863423)
chr5 (1-55)||(6126845-6126899)
chr5 (30-84)||(6126908-6126962)
chr5 (30-84)||(9395434-9395488)
chr5 (30-76)||(23360026-23360072)
chr5 (30-84)||(36563530-36563584)
chr5 (30-83)||(13103108-13103161)
chr5 (160-246)||(11320120-11320204)
chr5 (30-77)||(17025708-17025755)
chr5 (30-77)||(41989406-41989453)
chr5 (152-242)||(2611175-2611264)
chr5 (32-70)||(11574166-11574204)
chr5 (30-83)||(13033135-13033188)
chr5 (30-77)||(11795252-11795299)
chr5 (30-77)||(21576030-21576077)
chr5 (154-221)||(27544607-27544674)
chr5 (30-77)||(37642038-37642085)
chr5 (160-242)||(1447588-1447670)
chr5 (30-76)||(37148955-37149001)
chr5 (22-71)||(966224-966273)
chr5 (30-71)||(4444044-4444085)
chr5 (30-70)||(3549553-3549593)
chr5 (32-68)||(36595782-36595818)
[»] chr3 (57 HSPs)
chr3 (1-83)||(4238587-4238669)
chr3 (1-77)||(19557107-19557183)
chr3 (1-77)||(22721930-22722006)
chr3 (1-77)||(44785451-44785527)
chr3 (1-77)||(49823436-49823512)
chr3 (1-84)||(2787887-2787970)
chr3 (1-76)||(10297979-10298054)
chr3 (4-77)||(34080088-34080161)
chr3 (1-82)||(38964386-38964467)
chr3 (1-77)||(8437424-8437500)
chr3 (1-77)||(8817441-8817517)
chr3 (1-85)||(17653703-17653787)
chr3 (5-77)||(21295385-21295457)
chr3 (1-76)||(37508921-37508996)
chr3 (1-76)||(48340397-48340472)
chr3 (1-76)||(51406673-51406748)
chr3 (1-77)||(9111549-9111625)
chr3 (1-77)||(36095735-36095811)
chr3 (1-77)||(40691051-40691127)
chr3 (1-77)||(42507410-42507486)
chr3 (5-77)||(46208029-46208101)
chr3 (1-76)||(35513473-35513548)
chr3 (4-77)||(42170404-42170477)
chr3 (1-71)||(6013391-6013461)
chr3 (1-69)||(33942987-33943055)
chr3 (30-80)||(4238678-4238728)
chr3 (30-77)||(17653796-17653843)
chr3 (30-77)||(37509005-37509052)
chr3 (30-77)||(46208114-46208161)
chr3 (30-76)||(21295326-21295372)
chr3 (30-77)||(10298063-10298110)
chr3 (30-77)||(40690995-40691042)
chr3 (30-77)||(49823380-49823427)
chr3 (151-241)||(1711949-1712039)
chr3 (30-76)||(6013336-6013382)
chr3 (30-76)||(19557052-19557098)
chr3 (30-76)||(34080030-34080076)
chr3 (30-76)||(38964476-38964522)
chr3 (30-76)||(48340481-48340527)
chr3 (30-71)||(9111499-9111540)
chr3 (21-70)||(33128212-33128261)
chr3 (30-71)||(42507360-42507401)
chr3 (142-195)||(46647534-46647587)
chr3 (32-77)||(51406759-51406804)
chr3 (32-76)||(9213602-9213646)
chr3 (30-77)||(8437509-8437556)
chr3 (30-69)||(8817393-8817432)
chr3 (30-77)||(9027141-9027188)
chr3 (30-69)||(22722015-22722054)
chr3 (30-76)||(2787832-2787878)
chr3 (154-228)||(17109563-17109637)
chr3 (30-76)||(44785396-44785442)
chr3 (28-61)||(29285840-29285873)
chr3 (174-239)||(37043034-37043099)
chr3 (30-66)||(26001148-26001184)
chr3 (30-66)||(42170356-42170392)
chr3 (4-64)||(43323072-43323132)
[»] chr2 (52 HSPs)
chr2 (1-83)||(15896835-15896917)
chr2 (1-77)||(3055557-3055633)
chr2 (1-77)||(4683987-4684063)
chr2 (1-77)||(37990068-37990144)
chr2 (1-77)||(41478694-41478770)
chr2 (1-77)||(44397546-44397622)
chr2 (1-77)||(44398685-44398761)
chr2 (1-76)||(13197765-13197840)
chr2 (1-76)||(16044372-16044447)
chr2 (1-76)||(37666665-37666740)
chr2 (1-77)||(13344483-13344559)
chr2 (1-77)||(16243838-16243914)
chr2 (1-77)||(38917577-38917653)
chr2 (1-76)||(6648574-6648649)
chr2 (4-83)||(15372219-15372298)
chr2 (1-77)||(9047810-9047886)
chr2 (1-76)||(12337992-12338067)
chr2 (5-74)||(30099241-30099310)
chr2 (1-65)||(41492951-41493015)
chr2 (2-76)||(12170455-12170529)
chr2 (30-77)||(41492895-41492942)
chr2 (1-70)||(31150659-31150728)
chr2 (30-82)||(6648513-6648565)
chr2 (30-77)||(3055642-3055689)
chr2 (151-242)||(5525310-5525401)
chr2 (30-77)||(9047754-9047801)
chr2 (30-77)||(37990012-37990059)
chr2 (30-77)||(38917521-38917568)
chr2 (30-77)||(41478638-41478685)
chr2 (30-77)||(44398770-44398817)
chr2 (1-48)||(44804633-44804680)
chr2 (30-76)||(12337937-12337983)
chr2 (30-76)||(13197710-13197756)
chr2 (30-76)||(15372310-15372356)
chr2 (30-76)||(15896926-15896972)
chr2 (30-83)||(16243776-16243829)
chr2 (30-77)||(13344568-13344615)
chr2 (30-77)||(30099181-30099228)
chr2 (30-77)||(37666609-37666656)
chr2 (30-77)||(44397631-44397678)
chr2 (160-242)||(604730-604815)
chr2 (30-76)||(13724102-13724148)
chr2 (30-76)||(16044317-16044363)
chr2 (51-81)||(30761372-30761402)
chr2 (4-57)||(16734802-16734855)
chr2 (4-45)||(41453090-41453131)
chr2 (30-71)||(44804583-44804624)
chr2 (5-61)||(4553069-4553125)
chr2 (151-247)||(4652061-4652157)
chr2 (30-82)||(23227356-23227408)
chr2 (42-78)||(30852713-30852749)
chr2 (30-62)||(36089457-36089489)
[»] chr4 (53 HSPs)
chr4 (1-82)||(47833605-47833686)
chr4 (1-77)||(3372120-3372196)
chr4 (1-77)||(48336262-48336338)
chr4 (1-76)||(20538741-20538816)
chr4 (1-76)||(24704370-24704445)
chr4 (1-76)||(53337370-53337445)
chr4 (1-77)||(3992975-3993051)
chr4 (1-77)||(26231576-26231652)
chr4 (1-77)||(33551200-33551276)
chr4 (1-77)||(42797731-42797807)
chr4 (2-77)||(3904739-3904814)
chr4 (1-76)||(6121948-6122023)
chr4 (1-76)||(46797725-46797800)
chr4 (1-77)||(7579309-7579385)
chr4 (1-77)||(43900548-43900624)
chr4 (1-77)||(47838672-47838748)
chr4 (1-76)||(52756675-52756750)
chr4 (3-77)||(40913246-40913320)
chr4 (4-77)||(51894640-51894713)
chr4 (1-77)||(33621795-33621871)
chr4 (2-76)||(5986876-5986950)
chr4 (5-77)||(41469825-41469897)
chr4 (1-64)||(3422073-3422135)
chr4 (2-64)||(41615732-41615794)
chr4 (4-77)||(25855082-25855155)
chr4 (2-65)||(29845656-29845719)
chr4 (30-76)||(4780379-4780425)
chr4 (30-76)||(42797816-42797862)
chr4 (30-82)||(47838611-47838663)
chr4 (30-77)||(3422144-3422191)
chr4 (4-70)||(17236845-17236912)
chr4 (30-77)||(41469765-41469812)
chr4 (30-76)||(6121893-6121939)
chr4 (30-76)||(46797809-46797855)
chr4 (30-76)||(47833695-47833741)
chr4 (30-76)||(51894582-51894628)
chr4 (32-77)||(3904682-3904727)
chr4 (30-71)||(40913194-40913235)
chr4 (30-83)||(48336347-48336400)
chr4 (30-70)||(5986960-5987000)
chr4 (32-76)||(20538686-20538730)
chr4 (30-77)||(3993060-3993107)
chr4 (30-77)||(24704454-24704501)
chr4 (30-77)||(33621880-33621927)
chr4 (30-77)||(53337454-53337501)
chr4 (30-76)||(3372205-3372251)
chr4 (30-76)||(7579394-7579440)
chr4 (30-76)||(43900633-43900679)
chr4 (30-76)||(44900080-44900126)
chr4 (5-70)||(17344219-17344284)
chr4 (152-221)||(19147174-19147243)
chr4 (4-61)||(50430476-50430533)
chr4 (51-80)||(55190790-55190819)
[»] scaffold0482 (2 HSPs)
scaffold0482 (1-77)||(12859-12935)
scaffold0482 (30-77)||(12944-12991)
[»] scaffold0204 (2 HSPs)
scaffold0204 (1-77)||(23784-23860)
scaffold0204 (30-83)||(23869-23922)
[»] chr6 (39 HSPs)
chr6 (1-77)||(2830334-2830410)
chr6 (1-77)||(8383024-8383100)
chr6 (1-77)||(11572200-11572276)
chr6 (1-77)||(33052849-33052925)
chr6 (1-76)||(6330115-6330190)
chr6 (1-76)||(26602323-26602398)
chr6 (1-82)||(13853648-13853729)
chr6 (1-77)||(8099529-8099605)
chr6 (1-77)||(35031056-35031132)
chr6 (1-78)||(6143552-6143629)
chr6 (1-76)||(9644696-9644771)
chr6 (1-76)||(9650713-9650788)
chr6 (1-77)||(6068565-6068641)
chr6 (1-77)||(8417848-8417924)
chr6 (1-76)||(13043758-13043833)
chr6 (5-60)||(28747193-28747248)
chr6 (3-68)||(6068997-6069062)
chr6 (151-242)||(2911492-2911583)
chr6 (30-77)||(3788121-3788168)
chr6 (30-77)||(6330199-6330246)
chr6 (30-77)||(8099614-8099661)
chr6 (30-77)||(9644780-9644827)
chr6 (30-77)||(9650797-9650844)
chr6 (30-77)||(11572144-11572191)
chr6 (30-77)||(13853592-13853639)
chr6 (1-76)||(22896471-22896537)
chr6 (30-77)||(26602407-26602454)
chr6 (30-76)||(2830419-2830465)
chr6 (30-76)||(8382969-8383015)
chr6 (1-46)||(17992018-17992063)
chr6 (32-77)||(35031000-35031045)
chr6 (30-77)||(6068650-6068697)
chr6 (186-237)||(12677822-12677873)
chr6 (19-57)||(6549902-6549940)
chr6 (30-76)||(8417793-8417839)
chr6 (151-245)||(10008187-10008281)
chr6 (32-65)||(12473651-12473684)
chr6 (32-76)||(17992074-17992118)
chr6 (155-242)||(30929492-30929580)
[»] chr1 (57 HSPs)
chr1 (1-77)||(9981646-9981722)
chr1 (1-77)||(26471120-26471196)
chr1 (1-77)||(27159413-27159489)
chr1 (1-77)||(44668148-44668224)
chr1 (1-76)||(31842850-31842925)
chr1 (1-76)||(39402021-39402096)
chr1 (1-76)||(47216754-47216829)
chr1 (1-77)||(11795932-11796008)
chr1 (1-77)||(14984836-14984912)
chr1 (1-77)||(34042695-34042771)
chr1 (1-76)||(1050888-1050963)
chr1 (1-76)||(23278056-23278131)
chr1 (1-76)||(44955261-44955336)
chr1 (2-77)||(12483684-12483759)
chr1 (1-76)||(47777536-47777611)
chr1 (5-77)||(47588396-47588468)
chr1 (4-84)||(11897046-11897126)
chr1 (1-70)||(47969700-47969770)
chr1 (1-77)||(17556751-17556828)
chr1 (1-77)||(25694318-25694394)
chr1 (8-77)||(16448170-16448239)
chr1 (30-77)||(11897138-11897185)
chr1 (30-70)||(44955212-44955252)
chr1 (2-77)||(12213530-12213605)
chr1 (30-77)||(12483627-12483674)
chr1 (30-77)||(14984921-14984968)
chr1 (30-77)||(17556837-17556884)
chr1 (30-77)||(25694403-25694450)
chr1 (151-242)||(26855852-26855941)
chr1 (22-77)||(37552217-37552272)
chr1 (30-76)||(11796017-11796063)
chr1 (30-76)||(27159358-27159404)
chr1 (152-221)||(30627641-30627711)
chr1 (30-76)||(31842795-31842841)
chr1 (30-76)||(39401966-39402012)
chr1 (30-76)||(44668093-44668139)
chr1 (30-76)||(47777481-47777527)
chr1 (152-214)||(48282917-48282979)
chr1 (30-71)||(9981731-9981772)
chr1 (150-243)||(19066857-19066949)
chr1 (150-243)||(19114747-19114839)
chr1 (51-84)||(43929469-43929502)
chr1 (4-76)||(37552141-37552213)
chr1 (30-77)||(1050972-1051019)
chr1 (30-77)||(34042780-34042827)
chr1 (154-221)||(39238849-39238916)
chr1 (30-77)||(47216698-47216745)
chr1 (30-76)||(26471065-26471111)
chr1 (152-206)||(40391244-40391298)
chr1 (43-77)||(47678371-47678405)
chr1 (4-61)||(11989796-11989853)
chr1 (40-77)||(39720779-39720816)
chr1 (151-244)||(49731187-49731280)
chr1 (49-77)||(9302041-9302069)
chr1 (198-242)||(20471725-20471768)
chr1 (198-242)||(20559769-20559812)
chr1 (151-239)||(26829492-26829580)
[»] scaffold0009 (2 HSPs)
scaffold0009 (2-77)||(49504-49579)
scaffold0009 (30-76)||(49589-49635)
[»] scaffold1707 (1 HSPs)
scaffold1707 (1-77)||(1334-1410)
[»] scaffold0464 (2 HSPs)
scaffold0464 (1-76)||(6186-6261)
scaffold0464 (30-82)||(6125-6177)
[»] scaffold0415 (1 HSPs)
scaffold0415 (2-65)||(13782-13845)
[»] scaffold0171 (1 HSPs)
scaffold0171 (4-71)||(12411-12478)
[»] scaffold0011 (2 HSPs)
scaffold0011 (30-77)||(231302-231349)
scaffold0011 (1-76)||(231358-231433)
[»] scaffold0650 (1 HSPs)
scaffold0650 (4-77)||(43-115)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 95 - 308
Target Start/End: Original strand, 30774887 - 30775100
Alignment:
Q  95 ttaaataaataacctctcggaaaaatcgtttaagtcacattacatacaaatagaagttgtcttgaaaatataagctgtcacattttatcatgtaatgatt 194  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30774887 ttaaataaataatctctcggaaaaatcgtttaagtcacattacgtacaaatagaagttgtcttgaaaatataagctgtcacattttatcatgtaatgatt 30774986  T
Q  195 acgctactttttattaaaaatttactttgtttagctgcttaaccaatgtctctccaataaacaaaagcacggtctaacaaccacttacacttnnnnnnnc 294  Q
    || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30774987 acactgctttttattaaaaatttactttgtttagctggttaaccaatgtctctccaataaacaaaagcacggtctaacaaccacttacacttaaaaaaac 30775086  T
Q  295 aacccatagaataa 308  Q
    ||||||||||||||    
T  30775087 aacccatagaataa 30775100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1565784 - 1565860
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1565784 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 1565860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1738502 - 1738578
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1738502 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 1738578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7240824 - 7240748
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240824 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 7240748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38063968 - 38064044
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38063968 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 38064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46840935 - 46840859
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46840935 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 46840859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23314194 - 23314269
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314194 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 23314269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31319454 - 31319529
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31319454 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 31319529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7482300 - 7482219
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7482300 ctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtataattt 7482219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9268831 - 9268755
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9268831 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccagaggtagtat 9268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28536806 - 28536882
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28536806 ctagttaaaaattcattccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 28536882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36583470 - 36583395
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36583470 ctagttaaaaattaagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 36583395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 22285770 - 22285698
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22285770 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagtat 22285698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 94373 - 94448
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  94373 ctagttaaaaattctgtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagta 94448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 36016255 - 36016326
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36016255 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagta 36016326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38441535 - 38441460
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38441535 ctagttaaaaattcagttcaaatacattcacttttgttgacataaatttctcttataaataggaccggaggtagta 38441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4790323 - 4790246
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatc 78  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  4790323 ctagttaaaaatttagtccaaatacattcatttttgttgacctaaatttttcttataaataggaccggaggtagtatc 4790246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 33194810 - 33194720
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaat 241  Q
    ||||||| ||||||||| || |||||||| || | ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||||    
T  33194810 ttgtcttaaaaatataaactatcacatttgattaagtaatgattacactactttttattaaaaatttacttattttagttgcttaaccaat 33194720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 33418447 - 33418392
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaat 60  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  33418447 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttaaaaat 33418392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9575484 - 9575408
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||| ||||||  | ||||||||||||| || ||||||||| |||||||||| |||| |||||    
T  9575484 ctagttaaaaattcagtctaaatacgttaacttttgttgacccaactttctcttacaaataggaccagagggagtat 9575408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 40840175 - 40840243
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||||||||||||||| | | ||||||| || ||| |||||||| |||||||||||||||    
T  40840175 tagttaaaaattcagtccaaatacattgatttttgttaacttaactttctcttctaaataggaccggag 40840243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 7240833 - 7240885
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  7240833 acttttgttgacccaaaattctcttataaataggaccggagggagtattattt 7240885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 7482309 - 7482361
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  7482309 acttttgttgacccaaaattctcttataaataggaccggagggagtattattt 7482361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 1738493 - 1738446
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  1738493 acttttgttgacccaaaattctcttataaataggaccggagggagtat 1738446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 9268840 - 9268887
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9268840 acttttgttgacccaaaattctcttataaataggaccggagggagtat 9268887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 22285783 - 22285829
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  22285783 acttttgttgacccaaaattctcttataaataggaccggagggagta 22285829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 23314185 - 23314139
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  23314185 acttttgttgacccaaaattctcttataaataggaccggagggagta 23314139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 38441544 - 38441590
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  38441544 acttttgttgacccaaaattctcttataaataggaccggaggaagta 38441590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 46840944 - 46840990
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  46840944 acttttgttgacccaaaattctcttataaataggaccggagggagta 46840990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 4790332 - 4790381
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatca 79  Q
    |||||| |||||| ||| |||||||||||||||||||||||| |||||||    
T  4790332 acttttattgacccaaaattctcttataaataggaccggaggaagtatca 4790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28536797 - 28536744
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||| |||| | ||| |||||||||||||||||||||||| |||||||||||    
T  28536797 acttttattgatccaaaattctcttataaataggaccggagggagtatcattta 28536744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 33418460 - 33418500
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  33418460 acttttgttgacccaaaattctcttataaataggaccggag 33418500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 94364 - 94309
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaac 85  Q
    ||||||||||||| ||| ||||||||||||||||| |||||| ||||  |||||||    
T  94364 acttttgttgacccaaaattctcttataaataggatcggagggagtacaatttaac 94309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 36583479 - 36583526
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||| |||||| |||||    
T  36583479 acttttgttgacccaaaattctcttataaataggatcggagggagtat 36583526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 38063959 - 38063912
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| |||||    
T  38063959 acttttgttgacccaaaattctcttataaataggaccagagggagtat 38063912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 40840165 - 40840126
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccgga 69  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  40840165 acttttgttgacaaaaatttctcttataaataggaccgga 40840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 31319445 - 31319399
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| ||||    
T  31319445 acttttgttgacccaaaattctcttataaatagaaccggagggagta 31319399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 3411449 - 3411489
Alignment:
Q  44 aaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    ||||||||||||||||||||| |||||| ||||| ||||||    
T  3411449 aaatttctcttataaataggatcggagggagtattatttaa 3411489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 9575495 - 9575539
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||| || ||||||||||||||||||||| ||| ||||    
T  9575495 ttttgttgaccaaactttctcttataaataggaccgaagggagta 9575539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 11740386 - 11740474
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaacca 239  Q
    ||||||||||||||||| |||| || ||| ||||  |||| ||||| | |||||||| ||||| |||||||  |||  |||||||||||    
T  11740386 ttgtcttgaaaatataaactgttacttttgatcaactaattattacaccactttttaataaaattttacttcttttgcctgcttaacca 11740474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36016242 - 36016206
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggacc 66  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  36016242 acttttgttgacccaaaattctcttataaataggacc 36016206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 49)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 54667 - 54749
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54667 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattta 54749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43199409 - 43199491
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43199409 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtataattta 43199491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2890217 - 2890293
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2890217 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 2890293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7785833 - 7785909
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7785833 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 7785909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7805754 - 7805830
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805754 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 7805830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3304333 - 3304408
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3304333 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 3304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6552730 - 6552655
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6552730 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 6552655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12343195 - 12343270
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12343195 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 12343270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32114530 - 32114605
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32114530 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 32114605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44498242 - 44498317
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44498242 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 44498317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12763709 - 12763786
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatc 78  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12763709 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagtatc 12763786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25601055 - 25601131
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25601055 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcggaggtagtat 25601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32211418 - 32211494
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32211418 ctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaataggaccggaggtagtat 32211494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15888407 - 15888482
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15888407 ctagttaaaaattcaatccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 15888482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31654688 - 31654613
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31654688 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagta 31654613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39571258 - 39571333
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39571258 ctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaataggaccggaggtagta 39571333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33289316 - 33289392
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  33289316 ctagttaaaaattcagtccaaatacattcacttatgttgatctaaatttctcttataaataggaccggaggtagtat 33289392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7012246 - 7012171
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7012246 ctagttaaaaattcagtccaaatatattcacttttgttgatctaaatttctcttataaataggaccggaggtagta 7012171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 4245649 - 4245712
Alignment:
Q  14 cagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4245649 cagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 4245712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13578932 - 13578856
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||    
T  13578932 ctagttaaaaattcagttcaaatacattcacttttattgacctaaatttctcttataaatagaactggaggtagtat 13578856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 28463679 - 28463614
Alignment:
Q  8 aaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggta 73  Q
    |||||||||||||||||||   ||||||||||||| || |||||||||||||||||||||||||||    
T  28463679 aaaattcagtccaaatacatcaacttttgttgacccaactttctcttataaataggaccggaggta 28463614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8587245 - 8587170
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| |||| |||||||   ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  8587245 ctagttaaaaatttagtcaaaatacatcaacttttgttgaccaaactttctcttataaataggaccggagggagta 8587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 27422266 - 27422327
Alignment:
Q  22 atacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||| ||| ||||| |||||    
T  27422266 atacattcatttttgttgacccaaatttctcttataaataggaccgaagggagtattattta 27422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 43199400 - 43199352
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatc 78  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  43199400 acttttgttgaccaaaaattctcttataaataggaccggagggagtatc 43199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 54658 - 54611
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  54658 acttttgttgacccaaaattctcttataaataggaccggagggagtat 54611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 2890208 - 2890161
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  2890208 acttttgttgacccaaaattctcttataaataggaccggagggagtat 2890161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 7785824 - 7785777
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  7785824 acttttgttgacccaaaattctcttataaataggaccggagggagtat 7785777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 25601046 - 25600999
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  25601046 acttttgttgacccaaaattctcttataaataggaccggagggagtat 25600999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 39534164 - 39534231
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttac 219  Q
    |||||||||||||||| |||||||  ||||||| ||||| |||||  ||||||||| |||||||||||    
T  39534164 tgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaaatttac 39534231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 39571249 - 39571202
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  39571249 acttttgttgacccaaaattctcttataaataggaccggagggagtat 39571202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 6552739 - 6552785
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  6552739 acttttgttgacccaaaattctcttataaataggaccggagggagta 6552785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 33289307 - 33289261
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  33289307 acttttgttgacccaaaattctcttataaataggaccggagggagta 33289261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 39065560 - 39065649
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    |||||| ||||||||| ||||||| |||||||| ||||| || ||  || |||||| |||||||||||||  ||||| |||||||||||||    
T  39065560 tgtcttaaaaatataaactgtcactttttatcaagtaataatgacattattttttaataaaaatttacttcttttag-tgcttaaccaatg 39065649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 32211407 - 32211362
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  32211407 ttttgttgacccaaaattctcttataaataggaccggagggagtat 32211362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 12343186 - 12343146
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  12343186 acttttgttgaccaaaaattctcttataaataggaccggag 12343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 6899452 - 6899413
Alignment:
Q  43 taaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  6899452 taaatttttcttataaataggaccggaggtagtattattt 6899413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7012255 - 7012302
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| | ||| |||||||||||||||||||||||| |||||    
T  7012255 acttttgttgatccaaaattctcttataaataggaccggaggaagtat 7012302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 7805745 - 7805698
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  7805745 acttttgctgacccaaaattctcttataaataggaccggagggagtat 7805698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 10029247 - 10029156
Alignment:
Q  154 tcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgtct 245  Q
    ||||| ||||||||| ||| || ||| |||| ||||||||||  | |||||||  |||||||||||||  ||| | ||||||||||||||||    
T  10029247 tcttggaaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaaccaatgtct 10029156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 12763700 - 12763653
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| || ||||||||||||||||||||| |||||    
T  12763700 acttttgttgacccaaaattatcttataaataggaccggagggagtat 12763653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 37919487 - 37919416
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttacttt 222  Q
    |||| |||||||||||| ||||||  |||||| | ||||| |||||  ||||||||| ||||||||||||||    
T  37919487 ttgttttgaaaatataaactgtcattttttattaagtaataattacattactttttaataaaaatttacttt 37919416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 44498233 - 44498186
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||| |||||| ||| |||||||||||||||||||||||| |||||    
T  44498233 acttttattgacccaaaattctcttataaataggaccggagggagtat 44498186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 3304324 - 3304278
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  3304324 acttttgttgacccaaaattttcttataaataggaccggagggagta 3304278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13246851 - 13246801
Alignment:
Q  19 caaatacactcacttttgttgacctaaatttctcttataaataggaccgga 69  Q
    |||||||| ||| ||||||||| | ||||||||||||||||||||| ||||    
T  13246851 caaatacattcatttttgttgatccaaatttctcttataaataggatcgga 13246801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 17006982 - 17006916
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    |||| ||||||||||| || ||   ||||||||||||| || |||||||||||||||||| ||||||    
T  17006982 ttaacaattcagtccagatccatcaacttttgttgacccaactttctcttataaataggatcggagg 17006916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 17570265 - 17570331
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    |||| ||||||||||| || ||   ||||||||||||| || |||||||||||||||||| ||||||    
T  17570265 ttaacaattcagtccagatccatcaacttttgttgacccaactttctcttataaataggatcggagg 17570331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 31654697 - 31654743
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| ||||    
T  31654697 acttttgttgacccaaaattcttttataaataggaccggaggaagta 31654743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24692040 - 24692109
Alignment:
Q  8 aaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||| || |||||   |||||||||||||||| ||| |||||||||||||| || ||| |||||    
T  24692040 aaaattcagttcagatacatcaacttttgttgacctaactttttcttataaataggatcgaagggagtat 24692109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 32114519 - 32114474
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| ||| || ||||||||||||||||||||| |||||    
T  32114519 ttttgttgacccaaaattttcttataaataggaccggagggagtat 32114474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37149010 - 37149092
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37149010 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattta 37149092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9395425 - 9395350
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9395425 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 9395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23360017 - 23359938
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcat 80  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23360017 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccagaggtagtatcat 23359938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 583064 - 582983
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  583064 ctagttaaaaattcagtccaaatacattcacttatgttgacctaaatttctcttataaataggaccggaggtagtattattt 582983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20848149 - 20848073
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20848149 ctagttaaaaattcagtccaaatacattcacttttattgacctaaatttctcttataaataggaccggaggtagtat 20848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36563593 - 36563669
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36563593 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcggaggtagtat 36563669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41989462 - 41989538
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41989462 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttacaaataggaccggaggtagtat 41989538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11795243 - 11795168
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11795243 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcggaggtagta 11795168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 13033122 - 13033050
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13033122 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggaagtat 13033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 13103095 - 13103023
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13103095 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggaagtat 13103023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26350405 - 26350480
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26350405 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcggagggagta 26350480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17025699 - 17025623
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17025699 ctagttaaaaattcagtttaaatacattcacttttgtggacctaaatttctcttataaataggaccggaggtagtat 17025623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 37642029 - 37641946
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttg-ttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  37642029 ctagttaaaaattcagtccacatacattcactttttattgacctaaatttctcttataaataggaccggaggtagtattattta 37641946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 4444031 - 4443959
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4444031 ttaaaaattcagtctaaatacattcacttttgttgacctaaatttctcttataaataggaccgaaggaagtat 4443959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 38361750 - 38361822
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||| |||||    
T  38361750 ttaaaaattcagtccaaatacattcacttttattgacctaaatttatcttataaataggatcggaggaagtat 38361822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 21576017 - 21575970
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctc 52  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21576017 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctc 21575970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13539922 - 13539986
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccgga 69  Q
    |||||||||||||||||| ||||    | | ||||||||||||||||||||||||||||||||||||||    
T  13539922 ctagttaaaaattcagtctaaat----ttatttttgttgacctaaatttctcttataaataggaccgga 13539986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 14863423 - 14863333
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgt 243  Q
    |||||||||||||||| ||||||| |||||||| ||||| |||||  || |||||| |||||| ||||||| ||| | ||||||||||||||    
T  14863423 tgtcttgaaaatataaactgtcactttttatcaagtaataattacattaatttttaataaaaacttacttt-ttttggtgcttaaccaatgt 14863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6126899 - 6126845
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctctta 55  Q
    ||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  6126899 ctagttaaaaatttagtccaaatacattcatttttgttgatctaaatttctctta 6126845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 6126908 - 6126962
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||    
T  6126908 acttttgttgacccaaaattctcttataaataggaccggagggagtagcatttaa 6126962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 9395434 - 9395488
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  9395434 acttttgttgacccaaaattctcttataaataggaccggagggagtattatttaa 9395488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 23360026 - 23360072
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  23360026 acttttgttgacccaaaattctcttataaataggaccggaggtagta 23360072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 36563584 - 36563530
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  36563584 acttttgttgacccaaaattctcttataaataggaccggagggagtatgatttaa 36563530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 13103108 - 13103161
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||    
T  13103108 acttttgttgacccaaaattctcttataaataggaccggagggagtattattta 13103161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 11320204 - 11320120
Alignment:
Q  160 aaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgtctc 246  Q
    |||||||| ||||||| |||||||| ||||| |||||  ||||||||| |||||||| ||||| ||  | |||||||||||||||||    
T  11320204 aaatataaactgtcactttttatcaagtaataattacattactttttaataaaaattaactttttt--ggtgcttaaccaatgtctc 11320120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 17025708 - 17025755
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  17025708 acttttgttgacccaaaattctcttataaataggaccggagggagtat 17025755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41989453 - 41989406
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  41989453 acttttgttgacccaaaattctcttataaataggaccggagggagtat 41989406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 2611175 - 2611264
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    ||||||| |||||||||||||||| |||||| | ||||| |||||  ||||||||| |||||| ||||||  ||| | |||||||||||||    
T  2611175 tgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaacttacttcattt-ggtgcttaaccaatg 2611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 11574166 - 11574204
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggag 70  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  11574166 ttttgttgacctaaatgtctcttataaataggaccggag 11574204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 13033135 - 13033188
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||| ||| ||||||||||||||||| |||||| ||||| |||||    
T  13033135 acttttgttgacccaaaattctcttataaataggatcggagggagtattattta 13033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11795252 - 11795299
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| |||||    
T  11795252 acttttgttgacccaaaattctcttataaataggactggagggagtat 11795299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 21576030 - 21576077
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| | ||| |||||||||||||||||||||||| |||||    
T  21576030 acttttgttgatccaaaattctcttataaataggaccggagggagtat 21576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 27544674 - 27544607
Alignment:
Q  154 tcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactt 221  Q
    ||||||||||||||| ||| |  |||||||||||||||||||| | |||||||  | |||||||||||    
T  27544674 tcttgaaaatataagatgttattttttatcatgtaatgattacacaactttttcatgaaaatttactt 27544607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 37642038 - 37642085
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||| |||||| ||| |||||||||||||||||||||||| |||||    
T  37642038 acttttattgacccaaaattctcttataaataggaccggagggagtat 37642085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 1447588 - 1447670
Alignment:
Q  160 aaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    ||||||||||||| ||| || | || ||||| ||||| |||||||| |||||||| ||||||  ||| | |||||||||||||    
T  1447588 aaatataagctgttacagttgaccaagtaataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatg 1447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 37149001 - 37148955
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| ||||    
T  37149001 acttttgttgacccaaaattctattataaataggaccggagggagta 37148955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 966224 - 966273
Alignment:
Q  22 atacactcacttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||| ||| ||||||||| | |||||||||||||||||||||| |||||    
T  966224 atacattcatttttgttgatccaaatttctcttataaataggactggagg 966273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 4444044 - 4444085
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||||| ||||| |||||||||||||| |||||||||    
T  4444044 acttttgttgatctaaaattctcttataaataagaccggagg 4444085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 3549593 - 3549553
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||| |  ||||||||||||||||||||||||||||    
T  3549593 acttttgttaatataaatttctcttataaataggaccggag 3549553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 36595818 - 36595782
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccgg 68  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  36595818 ttttgttgacctaactttctcttataaataagaccgg 36595782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 57)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4238669 - 4238587
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4238669 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattta 4238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19557107 - 19557183
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19557107 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 19557183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22722006 - 22721930
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22722006 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 22721930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44785451 - 44785527
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44785451 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 44785527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49823436 - 49823512
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49823436 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 49823512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2787887 - 2787970
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  2787887 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagtattatttaa 2787970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10298054 - 10297979
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298054 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 10297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 34080088 - 34080161
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34080088 gttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 34080161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38964467 - 38964386
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  38964467 ctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaataggaccggaggtagtattattt 38964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8437500 - 8437424
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8437500 ctagttaaaaattcagtccaaatacattcacttttattgacctaaatttctcttataaataggaccggaggtagtat 8437424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8817441 - 8817517
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8817441 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccgaaggtagtat 8817517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17653787 - 17653703
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaac 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  17653787 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagtaccttttaac 17653703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 21295385 - 21295457
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21295385 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 21295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37508996 - 37508921
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37508996 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagta 37508921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48340472 - 48340397
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48340472 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttgtaaataggaccggaggtagta 48340397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51406748 - 51406673
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51406748 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagta 51406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9111549 - 9111625
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9111549 ctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaataggaccgaaggtagtat 9111625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36095735 - 36095811
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  36095735 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttatcttataaataggaccggagggagtat 36095811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40691051 - 40691127
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  40691051 ctagttaaaaattcagtccaaatacattcacttttgttaacctaaatttctcttataaataggaccggagttagtat 40691127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42507410 - 42507486
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42507410 ctagttcaaaattcagtccaaatacattcacttttgttgacctaaatttctattataaataggaccggaggtagtat 42507486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 46208101 - 46208029
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46208101 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagggagtat 46208029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35513548 - 35513473
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  35513548 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccgaagggagta 35513473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 42170404 - 42170477
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42170404 gttaaaaattcactccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagtat 42170477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6013391 - 6013461
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6013391 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaattggactggagg 6013461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33942987 - 33943055
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccgga 69  Q
    |||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||| ||||    
T  33942987 ctagttaaaaattcagtccaaatacattaacttttgttgacctaactttcttttataaataggatcgga 33943055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 4238678 - 4238728
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcat 80  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  4238678 acttttgttgaccaaaaattctcttataaataggaccggaggtagtatcat 4238728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 17653796 - 17653843
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  17653796 acttttgttgacccaaaattctcttataaataggaccggaggtagtat 17653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 37509005 - 37509052
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37509005 acttttgttgacccaaaattctcttataaataggaccggaggtagtat 37509052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 46208114 - 46208161
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  46208114 acttttgttgacctaaaattctcttataaataggaccggagggagtat 46208161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 21295372 - 21295326
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  21295372 acttttgttgacctaaaattctcttataaataggaccggagggagta 21295326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 10298063 - 10298110
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  10298063 acttttgttgacccaaaattctcttataaataggaccggagggagtat 10298110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 40691042 - 40690995
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  40691042 acttttgttgacccaaaattctcttataaataggaccggagggagtat 40690995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 49823427 - 49823380
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  49823427 acttttgttgacccaaaattctcttataaataggaccggagggagtat 49823380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 1711949 - 1712039
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaat 241  Q
    |||||||||||||||||| ||| |||||| |  | ||||| ||||  ||| ||||||||||||||||||||  ||||| || |||||||||    
T  1711949 ttgtcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttacttattttagttgtttaaccaat 1712039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 6013382 - 6013336
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  6013382 acttttgttgacccaaaattctcttataaataggaccggagggagta 6013336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 19557098 - 19557052
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  19557098 acttttgttgacccaaaattctcttataaataggaccggagggagta 19557052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 34080076 - 34080030
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  34080076 acttttgttgacccaaaattctcttataaataggaccggagggagta 34080030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 38964476 - 38964522
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  38964476 acttttgttgaccaaaaattctcttataaataggaccggagggagta 38964522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 48340481 - 48340527
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  48340481 acttttgttgacccaaaattctcttataaataggaccggagggagta 48340527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 9111540 - 9111499
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  9111540 acttttgttgacccaaaattctcttataaataggaccggagg 9111499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 33128261 - 33128212
Alignment:
Q  21 aatacactcacttttgttgacctaaatttctcttataaataggaccggag 70  Q
    |||||| | ||||||||||||||||||||||||||||| |||||| ||||    
T  33128261 aatacattaacttttgttgacctaaatttctcttataattaggactggag 33128212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 42507401 - 42507360
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  42507401 acttttgttgacccaaaattctcttataaataggaccggagg 42507360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 46647587 - 46647534
Alignment:
Q  142 aaatagaagttgtcttgaaaatataagctgtcacattttatcatgtaatgatta 195  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| ||| ||||||    
T  46647587 aaatagaagttgtcttgaaaagataagctgttacatttgatcaagtactgatta 46647534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 51406759 - 51406804
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  51406759 ttttgttgacccaaaattctcttataaataggaccggagggagtat 51406804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 9213602 - 9213646
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||    
T  9213602 ttttgttgacctaaatttctctaataaataggacgggagggagta 9213646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 8437509 - 8437556
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||  ||| |||||||||||||||||||||||| |||||    
T  8437509 acttttgttgactcaaaattctcttataaataggaccggagggagtat 8437556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 8817432 - 8817393
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccgga 69  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  8817432 acttttgttgacccaaaattctcttataaataggaccgga 8817393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 9027188 - 9027141
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| || ||| ||||||||||||||||||||| |||||    
T  9027188 acttttgttgacccaactttatcttataaataggaccggagggagtat 9027141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 22722015 - 22722054
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccgga 69  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  22722015 acttttgttgacccaaaattctcttataaataggaccgga 22722054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 2787878 - 2787832
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| ||||    
T  2787878 acttttgctgacccaaaattctcttataaataggaccggagggagta 2787832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 17109563 - 17109637
Alignment:
Q  154 tcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttag 228  Q
    ||||| |||||||| |||| ||||||||| | ||||| |||||   |||||||| |||||||||||||| |||||    
T  17109563 tcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaaatttactttatttag 17109637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 44785442 - 44785396
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| ||||    
T  44785442 acttttgttgacccaaaattctcttataaatagaaccggaggaagta 44785396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 29285840 - 29285873
Alignment:
Q  28 tcacttttgttgacctaaatttctcttataaata 61  Q
    |||||||||||||||||||||| |||||||||||    
T  29285840 tcacttttgttgacctaaatttatcttataaata 29285873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 37043034 - 37043099
Alignment:
Q  174 acattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaacca 239  Q
    |||||| |||| ||||||||||  ||||||||||||||||| ||||||  ||||| || |||||||    
T  37043034 acatttgatcaagtaatgattatactactttttattaaaaacttacttgatttagttgtttaacca 37043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 26001148 - 26001184
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggacc 66  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  26001148 acttttgttgacttaaatttctcttataaatatgacc 26001184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 42170392 - 42170356
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggacc 66  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  42170392 acttttgttgacccaaaattctcttataaataggacc 42170356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 43323132 - 43323072
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaatagga 64  Q
    |||||||||| | ||||||||||   ||||||||||||| || ||| ||||||||||||||    
T  43323132 gttaaaaatttaatccaaatacatcaacttttgttgacccaattttttcttataaatagga 43323072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15896917 - 15896835
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15896917 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtataattta 15896835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3055633 - 3055557
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3055633 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 3055557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4683987 - 4684063
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683987 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 4684063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37990068 - 37990144
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37990068 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 37990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41478694 - 41478770
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41478694 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 41478770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44397622 - 44397546
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44397622 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 44397546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44398761 - 44398685
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44398761 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 44398685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13197765 - 13197840
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13197765 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 13197840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16044372 - 16044447
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16044372 ctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 16044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37666665 - 37666740
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37666665 ctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 37666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13344559 - 13344483
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  13344559 ctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaatagaaccggaggtagtat 13344483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16243838 - 16243914
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  16243838 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttttcttataaataggaccggagatagtat 16243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38917577 - 38917653
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  38917577 ctagttaaaaattcagtccaaatacattcacttttattgacctaaatttatcttataaataggaccggaggtagtat 38917653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6648574 - 6648649
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  6648574 ctagttaaaaattcagtccaaatacattcatttatgttgacctaaatttctcttataaataggaccggaggtagta 6648649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 15372298 - 15372219
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  15372298 gttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggactggagggagtattattta 15372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9047810 - 9047886
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  9047810 ctagttaaaaattcagtccaaatacattcactttttttgacctaaatttctcttataaatatgaccggagatagtat 9047886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12337992 - 12338067
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  12337992 ctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttttcttataaatagaaccggaggtagta 12338067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 30099241 - 30099310
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtag 74  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  30099241 ttaaaaattcaatccaaatacattcatttttgttgacctaaatttctcttataaataggatcggaggtag 30099310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41492951 - 41493015
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggac 65  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  41492951 ctagttaaaaattctgtccaaatacattcacttttgttgacctaaatttcttttataaataggac 41493015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 12170455 - 12170529
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||||||||||| | |||||| ||||||||| |||||||| ||||||||| |||||| ||||    
T  12170455 tagttaaaaattcagtccaaatacattaacttttattgacctaattttctcttgtaaataggatcggagggagta 12170529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41492942 - 41492895
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  41492942 acttttgttgacccaaatttctcttataaataggaccggagggagtat 41492895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31150728 - 31150659
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||| ||||||||||||   ||||||||||||  || |||||||||||||||||| |||||    
T  31150728 ctagttaaaaatttagtccaaatacataaacttttgttgacgcaactttctcttataaataggatcggag 31150659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 6648565 - 6648513
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  6648565 acttttgttgacccaaaattctcttataaataggaccggagggagtattattt 6648513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3055642 - 3055689
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  3055642 acttttgttgacccaaaattctcttataaataggaccggagggagtat 3055689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 5525310 - 5525401
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    ||||||||||||  |||| ||| |||||| | ||  |||||||||  ||||||||||||||||| ||||||  ||||| |||||||||||||    
T  5525310 ttgtcttgaaaacgtaagatgttacatttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaaccaatg 5525401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 9047801 - 9047754
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9047801 acttttgttgacccaaaattctcttataaataggaccggagggagtat 9047754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 37990059 - 37990012
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  37990059 acttttgttgacccaaaattctcttataaataggaccggagggagtat 37990012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 38917568 - 38917521
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  38917568 acttttgttgacccaaaattctcttataaataggaccggagggagtat 38917521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41478685 - 41478638
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  41478685 acttttgttgacccaaaattctcttataaataggaccggagggagtat 41478638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 44398770 - 44398817
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  44398770 acttttgttgacccaaaattctcttataaataggaccggagggagtat 44398817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44804633 - 44804680
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatt 48  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||    
T  44804633 ctagttaaaaattcagtccaaatacattcatttatgttgacctaaatt 44804680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 12337983 - 12337937
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  12337983 acttttgttgacccaaaattctcttataaataggaccggagggagta 12337937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 13197756 - 13197710
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13197756 acttttgttgacccaaaattctcttataaataggaccggagggagta 13197710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 15372310 - 15372356
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  15372310 acttttgttgacccaaaattctcttataaataggaccggagggagta 15372356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 15896926 - 15896972
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  15896926 acttttgttgacccaaaattctcttataaataggaccggagggagta 15896972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 16243829 - 16243776
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||| ||| |||||||||||||||||||||| | ||||| |||||    
T  16243829 acttttgttgacccaaaattctcttataaataggaccggatggagtattattta 16243776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 13344568 - 13344615
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| | ||| |||||||||||||||||||||||| |||||    
T  13344568 acttttgttgatccaaaattctcttataaataggaccggagggagtat 13344615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 30099228 - 30099181
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||| ||||||||||||||||| |||||    
T  30099228 acttttgttgacccaaaattctctaataaataggaccggagggagtat 30099181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 37666656 - 37666609
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  37666656 actttagttgacccaaaattctcttataaataggaccggagggagtat 37666609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 44397631 - 44397678
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||||||| || |||||    
T  44397631 acttttgttgacccaaaattctcttataaataggaccggggggagtat 44397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 604815 - 604730
Alignment:
Q  160 aaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttac--tttg-tttagctgcttaaccaatg 242  Q
    |||| |||| ||| |||||| | || ||||||||||  ||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  604815 aaatgtaagatgttacatttgaccaagtaatgattatactactttttattaaaaatttactatttgttttagatgcttaaccaatg 604730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 13724148 - 13724102
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||| || |||||| |||||||||||||||| ||||    
T  13724148 acttttgttgacctagatgtctcttgtaaataggaccggagggagta 13724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 16044363 - 16044317
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| ||||    
T  16044363 actttagttgacccaaaattctcttataaataggaccggagggagta 16044317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 30761402 - 30761372
Alignment:
Q  51 tcttataaataggaccggaggtagtatcatt 81  Q
    |||||||||||||||||||||||||||||||    
T  30761402 tcttataaataggaccggaggtagtatcatt 30761372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 16734855 - 16734802
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttata 57  Q
    ||||||||||||||||| |||||   ||||||||||||| || |||||||||||    
T  16734855 gttaaaaattcagtccagatacatcaacttttgttgaccaaactttctcttata 16734802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 41453131 - 41453090
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaa 45  Q
    ||||||||||||||||||||||| | |||||| |||||||||    
T  41453131 gttaaaaattcagtccaaatacattaacttttattgacctaa 41453090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 44804624 - 44804583
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||| || |||| ||||||||||||||||||||||||    
T  44804624 acttttgttaacttaaaattctcttataaataggaccggagg 44804583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 4553069 - 4553125
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaata 61  Q
    ||||||||||| ||||||||||   | ||||||||||| || |||||||||||||||    
T  4553069 ttaaaaattcaatccaaatacatctatttttgttgaccaaactttctcttataaata 4553125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 4652061 - 4652157
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgtctct 247  Q
    ||||||||||||| |||||||| |||||| | || ||||||||||| |   ||||||| ||||| ||||||  ||||  ||||||| ||||| ||||    
T  4652061 ttgtcttgaaaatgtaagctgttacatttaaccaagtaatgattacacatatttttataaaaaacttacttattttatttgcttaatcaatgcctct 4652157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 23227356 - 23227408
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| |||| ||||||||||||||||| | ||| ||||| ||||    
T  23227356 acttttgttgaccaaaatgtctcttataaataggactgaaggaagtattattt 23227408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 30852713 - 30852749
Alignment:
Q  42 ctaaatttctcttataaataggaccggaggtagtatc 78  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  30852713 ctaactttctcttataaataggaccggagggagtatc 30852749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 36089489 - 36089457
Alignment:
Q  30 acttttgttgacctaaatttctcttataaatag 62  Q
    |||||||||||||||||| ||||||||||||||    
T  36089489 acttttgttgacctaaatatctcttataaatag 36089457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47833686 - 47833605
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47833686 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattt 47833605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3372196 - 3372120
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3372196 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 3372120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48336338 - 48336262
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48336338 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 48336262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20538741 - 20538816
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20538741 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 20538816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24704445 - 24704370
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24704445 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 24704370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 53337445 - 53337370
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53337445 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 53337370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3993051 - 3992975
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3993051 ctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctcttataaataggaccggaggtagtat 3992975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26231652 - 26231576
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  26231652 ctagttaaaaattcagtccaaatacattcgcttttgttgacctaaatttctcttataaataggaccggaggtagtat 26231576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33551276 - 33551200
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33551276 ctagttaaaaattcagtcaaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 33551200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42797807 - 42797731
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42797807 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttatatataggaccggaggtagtat 42797731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 3904739 - 3904814
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3904739 tagttaaaaattcagtccaaatacattcacttttgttgacctaaatttcttttataaataggaccggaggtagtat 3904814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6121948 - 6122023
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6121948 ctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaataggaccggaggtagta 6122023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 46797800 - 46797725
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46797800 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaatagaaccggaggtagta 46797725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7579385 - 7579309
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7579385 ctagttaaaaattcaatccaaatacattcacttttgttaacctaaatttctcttataaataggaccggaggtagtat 7579309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43900624 - 43900548
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43900624 ctagttaaaaattcagtccaaatacatttacttttgttgacctaaatttctcttataaataggaccggagggagtat 43900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47838672 - 47838748
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  47838672 ctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctcttataaataggatcggaggtagtat 47838748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 52756750 - 52756675
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  52756750 ctagttaaaaattcagtccaaatacattcacttatgttgacctaaatttctcttataaataggaccggagatagta 52756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 40913246 - 40913320
Alignment:
Q  3 agttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  40913246 agttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaataggaccggagggagtat 40913320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 51894640 - 51894713
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51894640 gttaaaaattcagtccaaaaacattcacttttgttgacctaaatttttcttataaataggaccggaggtagtat 51894713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33621871 - 33621795
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  33621871 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaatagaaccgaaagtagtat 33621795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 5986950 - 5986876
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  5986950 tagttaaaaattcagtccaaatacattcacttttgttgacctatatttctcttataaatagaatcggaggtagta 5986876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 41469825 - 41469897
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  41469825 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttcttttataaataggaccgaaggaagtat 41469897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3422135 - 3422073
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaatagga 64  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  3422135 ctagttaaaaattcagttcaaatacattca-ttttgttgacctaaatttctcttataaatagga 3422073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41615732 - 41615794
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaatagga 64  Q
    |||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  41615732 tagttaaaaattaagtccaaatacattaacttttgttgacctaattttctcttataaatagga 41615794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 25855155 - 25855082
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||||||| | ||||||||||||  || ||||||| |||||||||||| |||| |||||    
T  25855155 gttaaaaattcagtccaaatacattaacttttgttgactcaactttctctcataaataggacctgagggagtat 25855082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 29845719 - 29845656
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggac 65  Q
    |||||||||||||||| |||||| | | | ||||||||||||||||||||||||||| ||||||    
T  29845719 tagttaaaaattcagttcaaatatattaatttttgttgacctaaatttctcttataagtaggac 29845656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 4780379 - 4780425
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  4780379 acttttgttgaccaaaatttctcttataaataggaccggagggagta 4780425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 42797816 - 42797862
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  42797816 acttttgttgacctaaaattctcttataaataggaccggagggagta 42797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 47838663 - 47838611
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  47838663 acttttgttgaccaaaaattctcttataaataggaccggagggagtattattt 47838611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3422144 - 3422191
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  3422144 acttttgttgacccaaaattctcttataaataggaccggagggagtat 3422191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 17236845 - 17236912
Alignment:
Q  4 gttaaaaattcagtccaaa-tacactcacttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||||| ||| ||||   ||||||||||||| |||||| ||||||||||||||||||||    
T  17236845 gttaaaaattcagtctaaaatacatcaacttttgttgacccaaatttttcttataaataggaccggag 17236912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 41469812 - 41469765
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  41469812 acttttgttgaccaaaaattctcttataaataggaccggagggagtat 41469765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 6121939 - 6121893
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  6121939 acttttgttgacccaaaattctcttataaataggaccggagggagta 6121893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 46797809 - 46797855
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  46797809 acttttgttgacccaaaattctcttataaataggaccggagggagta 46797855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 47833695 - 47833741
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  47833695 acttttgttgacccaaaattctcttataaataggaccggagggagta 47833741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 51894628 - 51894582
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  51894628 acttttgttgacccaaaattctcttataaataggaccggagggagta 51894582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 3904727 - 3904682
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  3904727 ttttgttgacccaaaattctcttataaataggaccggagggagtat 3904682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 40913235 - 40913194
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  40913235 acttttgttgatccaaatttctcttataaataggaccggagg 40913194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 48336347 - 48336400
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||| |||||    
T  48336347 acttttgttgacccaaaattttcttataaataggaccggagggagtattattta 48336400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 5986960 - 5987000
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  5986960 acttttgttgacccaaaattctcttataaataggaccggag 5987000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 20538730 - 20538686
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  20538730 ttttgttgacccaaaattctcttataaataggaccggagggagta 20538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3993060 - 3993107
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |||||    
T  3993060 acttttgttgacccaaaattctcttataaataagaccggagggagtat 3993107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 24704454 - 24704501
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||||| |||||| |||||    
T  24704454 acttttgttgacccaaaattctcttataaataggatcggagggagtat 24704501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 33621880 - 33621927
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| || ||||||||||||||||||||| |||||    
T  33621880 acttttgttgacccaaaattatcttataaataggaccggagggagtat 33621927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 53337454 - 53337501
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||| |||||| ||| |||||||||||||||||||||||| |||||    
T  53337454 acttttattgacccaaaattctcttataaataggaccggagggagtat 53337501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3372205 - 3372251
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  3372205 acttttgttgacccaaaattatcttataaataggaccggagggagta 3372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 7579394 - 7579440
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| ||||    
T  7579394 acttttgttgacccaaaattctcttataaatagaaccggaggaagta 7579440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 43900633 - 43900679
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||| ||| ||| |||||||||||||||||||||||| ||||    
T  43900633 acttttgttaacccaaaattctcttataaataggaccggaggaagta 43900679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 44900126 - 44900080
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  44900126 acttttgttgaccagaatatctcttataaataggaccggagggagta 44900080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 17344284 - 17344219
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||| || |||||   |||||||||||  ||| |||||||||||||||| |||||||    
T  17344284 ttaaaaattcagttcagatacatcaacttttgttgatttaactttctcttataaatagaaccggag 17344219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 19147174 - 19147243
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactt 221  Q
    |||||||||||||||| ||||||| ||||||||  |||| |||||  ||||| ||| |||||| ||||||    
T  19147174 tgtcttgaaaatataaactgtcactttttatcaaataataattacattacttattaataaaaacttactt 19147243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 50430476 - 50430533
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaata 61  Q
    |||||||||||| ||||||||||   ||||||||||||| || || ||||||||||||    
T  50430476 gttaaaaattcaatccaaatacatcaacttttgttgacccaacttgctcttataaata 50430533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 55190790 - 55190819
Alignment:
Q  51 tcttataaataggaccggaggtagtatcat 80  Q
    ||||||||||||||||||||||||||||||    
T  55190790 tcttataaataggaccggaggtagtatcat 55190819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12935 - 12859
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 12859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 12944 - 12991
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  12944 acttttgctgacccaaaattctcttataaataggaccggagggagtat 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23860 - 23784
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 23784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 23869 - 23922
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattta 83  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||| |||||    
T  23869 acttttgttgacccaaaattttcttataaataggaccggagggagtattattta 23922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2830410 - 2830334
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2830410 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 2830334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8383024 - 8383100
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8383024 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 8383100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11572200 - 11572276
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11572200 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 11572276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33052849 - 33052925
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33052849 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 33052925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6330190 - 6330115
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6330190 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 6330115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26602398 - 26602323
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26602398 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 26602323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13853648 - 13853729
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13853648 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccgaaggtagtattattt 13853729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8099605 - 8099529
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8099605 ctagttaaaaattcaatccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 8099529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35031056 - 35031132
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35031056 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttttcttataaataggaccggaggtagtat 35031132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6143629 - 6143552
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatc 78  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6143629 ctagttaaaaattcaatccaaatacattcacttttgttgacctaaatttctcttataaataggatcggaggtagtatc 6143552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9644771 - 9644696
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  9644771 ctagttaaaaattcagtccaaatacattcatttatgttgacctaaatttctcttataaataggaccggaggtagta 9644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9650788 - 9650713
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  9650788 ctagttaaaaattcagtccaaatacattcatttatgttgacctaaatttctcttataaataggaccggaggtagta 9650713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6068641 - 6068565
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  6068641 ctagttaaaaattcaatccaaatacattcacttttattgacctaaatttttcttataaataggaccggaggtagtat 6068565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8417848 - 8417924
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||    
T  8417848 ctagttaaaaattcaatccaaatacattcacttttgttgacctaaatttctcttataaataagaccagagggagtat 8417924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13043833 - 13043758
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  13043833 ctagttaaaaattcaattcaaatacattcatttttgttgacctaaatttctcttataaatagaaccggaggtagta 13043758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 28747193 - 28747248
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaat 60  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  28747193 ttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaat 28747248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 6068997 - 6069062
Alignment:
Q  3 agttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccgg 68  Q
    ||||||||||| || ||||||||| | |||||||||||||||||| ||| ||||||||||||||||    
T  6068997 agttaaaaatttagaccaaatacattaacttttgttgacctaaatatcttttataaataggaccgg 6069062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 2911492 - 2911583
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    ||||||||||||| |||| ||| |||||| |||| ||||||||||  ||||||||| ||||||| ||| ||  ||||  |||||||||||||    
T  2911492 ttgtcttgaaaatgtaagatgttacatttgatcaagtaatgattatactacttttttttaaaaacttatttgttttaattgcttaaccaatg 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3788121 - 3788168
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  3788121 acttttgttgacctaaatttatcttataaataagaccggagggagtat 3788168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 6330199 - 6330246
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  6330199 acttttgttgacccaaaattctcttataaataggaccggagggagtat 6330246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 8099614 - 8099661
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  8099614 acttttgttgacccaaaattctcttataaataggaccggagggagtat 8099661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 9644780 - 9644827
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9644780 acttttgttgacccaaaattctcttataaataggaccggagggagtat 9644827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 9650797 - 9650844
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  9650797 acttttgttgacccaaaattctcttataaataggaccggagggagtat 9650844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 11572191 - 11572144
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  11572191 acttttgttgacccaaaattctcttataaataggaccggagggagtat 11572144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 13853639 - 13853592
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  13853639 acttttgttgacccaaaattctcttataaataggaccggagggagtat 13853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22896537 - 22896471
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||         |||||||||||| |||||||||||||||||||||||| ||||    
T  22896537 ctagttaaaaattcagtccaaatac---------tgttgacctaaacttctcttataaataggaccggagggagta 22896471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 26602407 - 26602454
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  26602407 acttttgttgacccaaaattctcttataaataggaccggagggagtat 26602454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 2830419 - 2830465
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  2830419 acttttgttgacccaaaattctcttataaataggaccggagggagta 2830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 8383015 - 8382969
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  8383015 acttttgttgacccaaaattctcttataaataggaccggagggagta 8382969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17992063 - 17992018
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaa 46  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||    
T  17992063 ctagttaaaaattcaatccaaatacattcacttttattgacctaaa 17992018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 35031045 - 35031000
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  35031045 ttttgttgacccaaaattctcttataaataggaccggaggaagtat 35031000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 6068650 - 6068697
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||  ||| |||||||||||||||||||||||| |||||    
T  6068650 acttttgttgactcaaaattctcttataaataggaccggagggagtat 6068697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 12677873 - 12677822
Alignment:
Q  186 gtaatgattacgctactttttattaaaaatttactttgtttagctgcttaac 237  Q
    ||||||||||| ||||||||||||||||| ||||||  ||||| ||||||||    
T  12677873 gtaatgattacactactttttattaaaaacttacttgttttagttgcttaac 12677822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 6549940 - 6549902
Alignment:
Q  19 caaatacactcacttttgttgacctaaatttctcttata 57  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  6549940 caaatacattaacttttgttgacctaaatttctcttata 6549902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 8417839 - 8417793
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||| ||| ||||    
T  8417839 acttttgttgacccaaaattctcttataaataggaccgaagggagta 8417793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 10008281 - 10008187
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgtct 245  Q
    ||||||| ||||||||| | || || ||| |||| ||||| ||||| | |||||||| |||||| ||||||  ||| | ||||||||||||||||    
T  10008281 ttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatgtct 10008187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 12473684 - 12473651
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggac 65  Q
    |||| |||||||||||||||||||||||||||||    
T  12473684 ttttattgacctaaatttctcttataaataggac 12473651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 17992074 - 17992118
Alignment:
Q  32 ttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||| ||| |||||||||||||||||||| ||| ||||    
T  17992074 ttttgttgacccaaaattctcttataaataggaccgaagggagta 17992118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 30929580 - 30929492
Alignment:
Q  155 cttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttatta-aaaatttactttgtttagctgcttaaccaatg 242  Q
    ||||||||| |||| ||| |||||| ||||  |||| ||||  ||||||||||||| |||||||||||  |||||  ||||||||||||    
T  30929580 cttgaaaatttaagatgttacatttgatcaaataataattatactactttttattaaaaaatttacttgttttagtcgcttaaccaatg 30929492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 57)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9981722 - 9981646
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981722 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 9981646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26471120 - 26471196
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26471120 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 26471196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27159413 - 27159489
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159413 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 27159489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44668148 - 44668224
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44668148 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 44668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31842850 - 31842925
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31842850 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 31842925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39402021 - 39402096
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39402021 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 39402096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47216754 - 47216829
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47216754 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 47216829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11796008 - 11795932
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11796008 ctagttaaaaattcagtccaaatgcattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 11795932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14984912 - 14984836
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14984912 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagtat 14984836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34042771 - 34042695
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34042771 ctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaataggaccggaggtagtat 34042695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1050963 - 1050888
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1050963 ctagttaaaaattcagtccaaatgcattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 1050888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23278056 - 23278131
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23278056 ctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaataggaccggaggtagta 23278131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44955261 - 44955336
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44955261 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttttcttataaataggaccggaggtagta 44955336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 12483684 - 12483759
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12483684 tagttcaaaattcagtctaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 12483759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47777536 - 47777611
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47777536 ctagttcaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccgggggtagta 47777611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 47588396 - 47588468
Alignment:
Q  5 ttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  47588396 ttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataagaccagaggtagtat 47588468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11897126 - 11897046
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtatcatttaa 84  Q
    |||||||||||||| || |||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  11897126 gttaaaaattcagttcagatacatcaacttttgttgacctaactttctcttataaataggaccggagggagtatcatttaa 11897046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47969770 - 47969700
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctc-ttataaataggaccggag 70  Q
    |||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  47969770 ctagttaaaaattcagtctaaatacatttacttttgttgacctaaatttctctttataaataggaccggag 47969700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17556828 - 17556751
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactca-cttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||| |||| |||||    
T  17556828 ctagttaaaaattcagtccaaatacatttaacttttgttgacctaactttctcttataaataggaccagagggagtat 17556751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25694394 - 25694318
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| | |||| |||||    
T  25694394 ctagttaaaaattcaatccaaatacattcacttttattgatctaaatttctcttataaataggatcagagggagtat 25694318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 16448170 - 16448239
Alignment:
Q  8 aaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| |||||   ||||||||||||| || ||||||||||||||||||||||||| |||||    
T  16448170 aaaattcagtccagatacatcaacttttgttgacccaactttctcttataaataggaccggagggagtat 16448239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 11897138 - 11897185
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  11897138 acttttgttgacccaaatttctcttataaataggaccggagggagtat 11897185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 44955252 - 44955212
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggag 70  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  44955252 acttttgttgacctaaaattctcttataaataggaccggag 44955212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 12213530 - 12213605
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||| || ||||||| | | ||||||||||||||  |||||||||||||| ||| ||||| |||||    
T  12213530 tagttaaaaattcaatctaaatacattaatttttgttgacctaacattctcttataaataagactggagggagtat 12213605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 12483674 - 12483627
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  12483674 acttttgttgacccaaaattctcttataaataggaccggagggagtat 12483627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 14984921 - 14984968
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  14984921 acttttgttgacccaaaattctcttataaataggaccggagggagtat 14984968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 17556837 - 17556884
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||    
T  17556837 acttttgttgacccaagtttctcttataaataggaccggagggagtat 17556884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 25694403 - 25694450
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  25694403 acttttgttgacccaaaattctcttataaataggaccggagggagtat 25694450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 26855852 - 26855941
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    |||||||| |||||||| ||||||| |||||||| ||||| |||||  ||||||| || ||||||||||||| ||| | |||||||||||||    
T  26855852 ttgtcttggaaatataatctgtcactttttatcaagtaataattacattacttttaat-aaaaatttactttattt-ggtgcttaaccaatg 26855941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 37552217 - 37552272
Alignment:
Q  22 atacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||| || |||||    
T  37552217 atacattcatttttgttgacccaaatttctcttataaataggaccggggggagtat 37552272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 11796017 - 11796063
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  11796017 acttttgttgacccaaaattctcttataaataggaccggagggagta 11796063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 27159404 - 27159358
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  27159404 acttttgttgacccaaaattctcttataaataggaccggagggagta 27159358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 30627641 - 30627711
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctacttttt-attaaaaatttactt 221  Q
    ||||||| |||||||| ||||||| |||||| | |||||||||||  |||||||| |||||||||||||||    
T  30627641 tgtcttggaaatataacctgtcactttttataaagtaatgattacattactttttaattaaaaatttactt 30627711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 31842841 - 31842795
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  31842841 acttttgttgacccaaaattctcttataaataggaccggagggagta 31842795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 39402012 - 39401966
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  39402012 acttttgttgacccaaaattctcttataaataggaccggagggagta 39401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 44668139 - 44668093
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  44668139 acttttgttgacccaaaattctcttataaataggaccggagggagta 44668093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 47777527 - 47777481
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  47777527 acttttgttgacccaaaattctcttataaataggaccggagggagta 47777481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 48282917 - 48282979
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaa 214  Q
    |||||||||||||||| ||||||| |||||||| ||||| |||||  ||||||||| ||||||    
T  48282917 tgtcttgaaaatataatctgtcactttttatcaggtaataattacattactttttagtaaaaa 48282979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 9981731 - 9981772
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  9981731 acttttgttgacccaaaattctcttataaataggaccggagg 9981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 19066949 - 19066857
Alignment:
Q  150 gttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgt 243  Q
    ||||||||  ||||||||  |||||| ||||| || ||||| |||||  ||||||||| |||||||||||||| ||| || |||||||||||||    
T  19066949 gttgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactttatttggc-gcttaaccaatgt 19066857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 19114839 - 19114747
Alignment:
Q  150 gttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgt 243  Q
    ||||||||  ||||||||  |||||| ||||| || ||||| |||||  ||||||||| |||||||||||||| ||| || |||||||||||||    
T  19114839 gttgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactttatttggc-gcttaaccaatgt 19114747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 43929469 - 43929502
Alignment:
Q  51 tcttataaataggaccggaggtagtatcatttaa 84  Q
    ||||||||||||||||||||||||||||||||||    
T  43929469 tcttataaataggaccggaggtagtatcatttaa 43929502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37552213 - 37552141
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||||||| |||||   ||| ||||||||  || ||| ||||||||||||||||||||| ||||    
T  37552213 gttaaaaattcagtccagatacatgaactgttgttgactcaactttatcttataaataggaccggagggagta 37552141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1050972 - 1051019
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  1050972 actttagttgacccaaaattctcttataaataggaccggagggagtat 1051019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 34042780 - 34042827
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| |||||    
T  34042780 acttttgttgacccaaaattctcttataaatagaaccggagggagtat 34042827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 39238916 - 39238849
Alignment:
Q  154 tcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactt 221  Q
    |||| ||||| |||| ||| |||||| |||| ||||||||||| ||| ||||||||||||| ||||||    
T  39238916 tcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaacttactt 39238849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 47216745 - 47216698
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||| ||| ||||||||||||||| |||||||| |||||    
T  47216745 acttttgttgacccaaaattctcttataaatagtaccggagggagtat 47216698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 26471111 - 26471065
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||||    
T  26471111 acttttgttgatccaaaattctcttataaataggaccggagggagta 26471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 40391244 - 40391298
Alignment:
Q  152 tgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctacttttt 206  Q
    |||||||||||||||| ||||||| |||||||| ||||| |||||  ||||||||    
T  40391244 tgtcttgaaaatataaactgtcactttttatcaagtaataattacattacttttt 40391298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 47678371 - 47678405
Alignment:
Q  43 taaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||| |||||||||||||||||||||||||||    
T  47678371 taaatttttcttataaataggaccggaggtagtat 47678405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 11989853 - 11989796
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaata 61  Q
    ||||||||||||||||||||| | |   ||||||||||| || |||||||||||||||    
T  11989853 gttaaaaattcagtccaaatatattagtttttgttgacccaactttctcttataaata 11989796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 39720779 - 39720816
Alignment:
Q  40 acctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||| | |||||||||||||||||||||||||||||    
T  39720779 acctaattgtctcttataaataggaccggaggtagtat 39720816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 49731187 - 49731280
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaaccaatgtc 244  Q
    |||||||||| || |||| ||| |||||| | ||  |||| ||||  ||||||||||||||||| ||||||  ||||| || ||||||||||||    
T  49731187 ttgtcttgaagatgtaagatgttacatttgaccaaataataattatactactttttattaaaaacttacttgttttagttgtttaaccaatgtc 49731280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 9302041 - 9302069
Alignment:
Q  49 tctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||||||    
T  9302041 tctcttataaataggaccggaggtagtat 9302069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 20471725 - 20471768
Alignment:
Q  198 ctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||    
T  20471725 ctactttttaataaaaatttactttatttagc-gcttaaccaatg 20471768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 20559812 - 20559769
Alignment:
Q  198 ctactttttattaaaaatttactttgtttagctgcttaaccaatg 242  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||    
T  20559812 ctactttttaataaaaatttactttatttagc-gcttaaccaatg 20559769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 26829580 - 26829492
Alignment:
Q  151 ttgtcttgaaaatataagctgtcacattttatcatgtaatgattacgctactttttattaaaaatttactttgtttagctgcttaacca 239  Q
    |||||||| ||||||||| ||| || ||| || | ||||||||||| | |||||||  | |||||||||||  ||||| ||||||||||    
T  26829580 ttgtcttggaaatataagatgttacttttgataaagtaatgattacacaactttttcatgaaaatttacttattttagatgcttaacca 26829492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 49579 - 49504
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49579 tagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 49504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 49589 - 49635
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  49589 acttttgttgacccaaaattctcttataaataggaccggagggagta 49635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1707 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1410 - 1334
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1410 ctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggaccggatgtagtat 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6186 - 6261
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6186 ctagttaaaaattcagtccacatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagta 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 6177 - 6125
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtatcattt 82  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||    
T  6177 acttttgttgacccaaaattttcttataaataggaccggagggagtattattt 6125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 13782 - 13845
Alignment:
Q  2 tagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggac 65  Q
    |||||||||||||||| |||||| | | | ||||||||||||||||||||||||||| ||||||    
T  13782 tagttaaaaattcagttcaaatatattaatttttgttgacctaaatttctcttataagtaggac 13845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 12411 - 12478
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggagg 71  Q
    ||||| |||| || ||||| ||||  |||||| |||||| |||| |||||||||||||||||||||||    
T  12411 gttaagaatttagaccaaacacaccaactttttttgaccaaaatatctcttataaataggaccggagg 12478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 231349 - 231302
Alignment:
Q  30 acttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    ||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  231349 acttttgttgacctaatattctcctataaataggaccggagggagtat 231302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 231358 - 231433
Alignment:
Q  1 ctagttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagta 76  Q
    |||||| ||||||||||||| |||||   ||||||||||| | || |||||||||||| ||||| |||||| ||||    
T  231358 ctagttcaaaattcagtccagatacataaacttttgttgatccaactttctcttataattaggatcggagggagta 231433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 43 - 115
Alignment:
Q  4 gttaaaaattcagtccaaatacactcacttttgttgacctaaatttctcttataaataggaccggaggtagtat 77  Q
    |||||||||| ||||||||||||   ||||||||||||| |  |||||| ||||||||| |||||||| |||||    
T  43 gttaaaaatttagtccaaatacatcaacttttgttgaccaatctttctc-tataaatagaaccggagggagtat 115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University