View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-1 (Length: 1105)
Name: NF1526R-Insertion-1
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 12380105 - 12380516
Alignment:
| Q |
8 |
acgatcaagttagaaacaaatggagggttcaaacaaagaacacacaagacgacacattggaagtttatgtgtcgaattatcttgtgattgccaccggtga |
107 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
12380105 |
acgatgaagttggaaacaaatggagggttcaaacaaagaacacacaagacgacacattggaggtttatgtgtcgaattatcttgtgattgccactggtga |
12380204 |
T |
|
| Q |
108 |
aaatagtgaaggttatattcctaatgtgtctggactaggcaactttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatca |
207 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
12380205 |
aaatagtgaaggttatattcctaatgtgcctggactaggcaacttcgaaggagaggtgatgcactccaaatactacaaatctggttcaaaatacgaatca |
12380304 |
T |
|
| Q |
208 |
aaaaatgttttggtagttggatgtggtaactcaggaatggagattgcttatgacctccacaattggggtgctagcccttccattgtcattcgaaatccgg |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12380305 |
aaaaatgttttggtagttgggtgtggtaactcaggaatggagattgcttatgacctccacaattggggtgctagcgcttccattgtcattcgaaatccgg |
12380404 |
T |
|
| Q |
308 |
taatttatttttaacatactcttttaataaactaacagtaacaaaacataatcactcactttttgtacattcatatgacacatgatgaattactttaaac |
407 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12380405 |
taatttttttttaacttactcttttaataaactaacagtaacaaaacataatcactcactttttgtacattcatatgacacatgatgaattactttaaac |
12380504 |
T |
|
| Q |
408 |
atgtttcacata |
419 |
Q |
| |
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|||| ||||||| |
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|
| T |
12380505 |
atgtctcacata |
12380516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 440 - 679
Target Start/End: Original strand, 12380825 - 12381064
Alignment:
| Q |
440 |
tgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatattgtggatacatacattactcttttggcaaaact |
539 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12380825 |
tgcatgtcttcactagggaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatattgtggatacatacattactcttttggcaaaact |
12380924 |
T |
|
| Q |
540 |
aaaatatggtgatctctctaaatatggaatttatcgtcccaaagagggacctttacatctcaaaaatattacaagaaagtcggccgttattgatgttgga |
639 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
12380925 |
aaaatatggtgatctgtctaaatatggaatttatcgtcccaaagagggacctttacatctcaaaaatattacaggaaagtctgccgttattgatgttgga |
12381024 |
T |
|
| Q |
640 |
accattggaaagattaaggagggagctataaaggtaaatt |
679 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
12381025 |
accattggaaagattaaggagggtgctataaaggtaaatt |
12381064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 824 - 963
Target Start/End: Original strand, 12381295 - 12381433
Alignment:
| Q |
824 |
accaggttgttccttcaaattataaccagaatcgagaaagaagaaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctac |
923 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
12381295 |
accaggttgttccttcaaat-ataaccagaattgagaa-gaagaaaa-ttgtctttgaaaacaatgtagaaagagagtttgatgcaattgtttttgctac |
12381391 |
T |
|
| Q |
924 |
cggctacaaaagcatagctaat-gat-gctcaaggtataaaa |
963 |
Q |
| |
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|||||| ||||| ||||||||| ||| ||||||||||||||| |
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| T |
12381392 |
cggctataaaagtatagctaatggatggctcaaggtataaaa |
12381433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 782 - 823
Target Start/End: Original strand, 12381110 - 12381151
Alignment:
| Q |
782 |
ttttttaagtttattcaatatctaatgtatttggtctatata |
823 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
12381110 |
ttttttaggttcattcaatatctaatgtatttggtctatata |
12381151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 1e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 14352683 - 14352976
Alignment:
| Q |
17 |
ttagaaacaaatggagggttcaaacaaagaacacacaagacgacacattggaagtttatgtgtcgaattatcttgtgattgccaccggtgaaaatagtga |
116 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| ||| | | |||||||||||||| | |||| | ||||||||| |||||||| ||||||||||| |
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|
| T |
14352683 |
ttagaagcgaatggagggttgaaacaaagaacacaatagaagggatattggaagtttatgaggcgaagtttcttgtgatcgccaccggcgaaaatagtga |
14352782 |
T |
|
| Q |
117 |
aggttatattcctaatgtgtctggactaggcaactttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgtt |
216 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||| | ||| |
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|
| T |
14352783 |
aggttatattcctaatgtgcctggactgaataactttgaaggagaggtggtacactccaaaaattacaaatctggttcaaaatataaaacaaaagaggtt |
14352882 |
T |
|
| Q |
217 |
ttggtagttggatgtggtaactcaggaatggagattgcttatgacctccacaattggggtgctagcccttccattgtcattcgaaatccggtaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||| || ||||| |||||| |||||||| |
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| T |
14352883 |
ttggtagttggatgtggtaactcaggaatggagattgcttatgacctccataactcgggtgctaacccatctattgtggttcgaagtccggtaa |
14352976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 437 - 675
Target Start/End: Original strand, 14353641 - 14353879
Alignment:
| Q |
437 |
agttgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatattgtggatacatacattactcttttggcaaa |
536 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| ||||| | |||||||||| ||||||||| | |||||| |
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| T |
14353641 |
agtttcatgtcttcaatagagaaataattcaccaagggatgcgaatggtgaaatatttttcggttggtgttgtggatactatcattactctatgggcaaa |
14353740 |
T |
|
| Q |
537 |
actaaaatatggtgatctctctaaatatggaatttatcgtcccaaagagggacctttacatctcaaaaatattacaagaaagtcggccgttattgatgtt |
636 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||| ||| ||||||||| |||| || ||| | ||| ||||||| || |||||||||||| |
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| T |
14353741 |
actaaaatatggtgatttgtctaagtatgggatttatcgtcctaaattgggacctttcaatcttaagaatgtgacaggaaagtctgcagttattgatgtt |
14353840 |
T |
|
| Q |
637 |
ggaaccattggaaagattaaggagggagctataaaggta |
675 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
14353841 |
ggaaccgttgaaaagattaaggaggggtctataaaggta |
14353879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 872 - 946
Target Start/End: Original strand, 14354002 - 14354076
Alignment:
| Q |
872 |
ttgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccggctacaaaagcatagctaatg |
946 |
Q |
| |
|
|||| ||||||||||| || |||| |||||||||||| || |||||||| || |||||||||||||||||||||| |
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|
| T |
14354002 |
ttgtatttgaaaacaacatggaaaaagagtttgatgcgatcgtttttgcaactggctacaaaagcatagctaatg |
14354076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 43886494 - 43886229
Alignment:
| Q |
14 |
aagttagaaacaaatggagggttcaaacaaagaacacacaagacgacacattggaagtttatgtgtcgaattatcttgtgattgccaccggtgaaaatag |
113 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||| || |||| | | ||||||| |||||| | | || | |||||||||||||||||| |||| || |
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|
| T |
43886494 |
aagttagagacaaatggaggattgaaacaaagaatactaaagaaggaatattggaattttatgaggcaaagtttcttgtgattgccaccggcaaaaaaag |
43886395 |
T |
|
| Q |
114 |
tgaaggttatattcctaatgtgtctggactaggcaactttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatcaaaaaat |
213 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | | ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| | |
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|
| T |
43886394 |
tgaaggttatattcctaacgtgcctggaatggatgactttgaaggagaggtggtacactcgaaatattacaaatctggttcaaaatatgaatcaaaagag |
43886295 |
T |
|
| Q |
214 |
gttttggtagttggatgtggtaactcaggaatggagattgcttatgacctccacaattggggtgct |
279 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
43886294 |
gttttggtagttgggtgtggtaactcataaatggagattgcttatgatctccataactggggtgct |
43886229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 436 - 675
Target Start/End: Complemental strand, 43884244 - 43884006
Alignment:
| Q |
436 |
cagttgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatattgtggatacatacattactcttttggcaa |
535 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| ||||| |||||||| |||||||||||| || |||||||| | ||||||| ||| ||||| |
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|
| T |
43884244 |
cagtttcatgtcttcagtagagaaatgattcgtcaagggatgcgaatggtgaattatttgccggttgatgttgtggatgctatcattact-tttcggcaa |
43884146 |
T |
|
| Q |
536 |
aactaaaatatggtgatctctctaaatatggaatttatcgtcccaaagagggacctttacatctcaaaaatattacaagaaagtcggccgttattgatgt |
635 |
Q |
| |
|
||||||||||||||||| | || || |||| ||||||||||||||| |||||||||||| ||||| || | | | |||| || || ||||||||| | |
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|
| T |
43884145 |
aactaaaatatggtgatttgtccaagtatgagatttatcgtcccaaattgggacctttacaactcaagaacgtgataggaaaatctgcagttattgattt |
43884046 |
T |
|
| Q |
636 |
tggaaccattggaaagattaaggagggagctataaaggta |
675 |
Q |
| |
|
||||||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
43884045 |
tggaaccatcgaaaagattaattagggatctataaaggta |
43884006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 43883576 - 43883507
Alignment:
| Q |
877 |
tttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccggctacaaaagcatagctaatg |
946 |
Q |
| |
|
|||| |||||| || |||| ||||||||||| ||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
43883576 |
tttggaaacaacatggaaaaagagtttgatgtaatcgttttcgcgactggctacaaaagcatagctaatg |
43883507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 783 - 821
Target Start/End: Complemental strand, 32082198 - 32082160
Alignment:
| Q |
783 |
tttttaagtttattcaatatctaatgtatttggtctata |
821 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
32082198 |
tttttaagtttattcaacatctaatatatttggtctata |
32082160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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