View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-11 (Length: 246)
Name: NF1526R-Insertion-11
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 43077743 - 43077978
Alignment:
| Q |
8 |
aattaattagtttcattttcattttcaagatgaaatcgttctaaaa-tttgactaatgaagttggtaataacatatataggggtgtcacgtgcatgcaat |
106 |
Q |
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| T |
43077743 |
aattaattagtttcattttcattttcaagatgaaatcgttctaaaaatttgactaatgaagttggtaataacata----ggggtgtcacgtgcatgcaat |
43077838 |
T |
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| Q |
107 |
agcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacgggattctcgtttgtacactgtaaggtcacgggatcaggagca |
206 |
Q |
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| T |
43077839 |
agcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacgggattctcgtttgtacactgtaaggtcacgggatcaggagca |
43077938 |
T |
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| Q |
207 |
ctataccttggaagggcttggggtcccttttctcgggttg |
246 |
Q |
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| T |
43077939 |
ctataccttggaagggcttggggtcccttttctcgggttg |
43077978 |
T |
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Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 33964273 - 33964118
Alignment:
| Q |
83 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacgggattctcgtttgtacac |
182 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||| ||||||| || ||||| |||||| || |
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| T |
33964273 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtttctcatttgtaaac |
33964174 |
T |
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| Q |
183 |
tgtaaggtcacgggatcaggagcactataccttggaagggcttggggtcccttttc |
238 |
Q |
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| T |
33964173 |
tgtaaggtcacggggtcaggagcactataccttggaagagcttggggtcctttttc |
33964118 |
T |
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