View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-2 (Length: 1020)
Name: NF1526R-Insertion-2
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 151 - 994
Target Start/End: Original strand, 41033975 - 41034831
Alignment:
| Q |
151 |
ccattccttaaccaaacattatcttaataagttagcaacagtatataagcagtaagatagatag------------gactctcctcaatgttaatatata |
238 |
Q |
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| T |
41033975 |
ccattccttaaccaaacattatcttaataagttagcaacagtatataagcagtaagatagatagtaagatagataggactctcctcaatgttaatatata |
41034074 |
T |
|
| Q |
239 |
ttttctcaaccctctcgttcttagggaaaatgagctatgatgattcgaatttctgcaatgaagtaaatacactctaatcaagaattgttctatcctataa |
338 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41034075 |
ttttctcaaccctctcgtccttagggaaaatgagctatgatgattcgaatttctgcaatgaagcaaatacactctaatcaagaattgttctatcctataa |
41034174 |
T |
|
| Q |
339 |
ttgaatttggtttctctcgaatgattcatcctttagcagaattcattaatcatttcaacccaattgcttcatgttaaatattcatttaaaagtacacatt |
438 |
Q |
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| T |
41034175 |
ttgaatttggtttctctcgaatgattcatcctttagcagaactcattaatcatttcaacccaattgcttcatgttaaatattcatttaaaagtacacatt |
41034274 |
T |
|
| Q |
439 |
tgcatgaaatatccataatttatttaaatttcattgggtttattgaaaaactattttgtgacatctcaatattttcatattttgccggnnnnnnnn---- |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
41034275 |
tgcatgaaatatccataatttatttaaatttcattgggttt-ttgaaaaactattttgtgacatctcaatattttcatattttgtccgtttttttttttt |
41034373 |
T |
|
| Q |
535 |
-cacttagaaaagcagtgcaatttcatgaattaagaccctcttcatttatgatcctatcaatttcatgagatccaccgtaagacgcattatctacttgtt |
633 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034374 |
tcacttagaaaagcagtgcaatttcatgaattaagaccctcttcatttatgatcctatcaatttcatgagatccaccgtaagacgcattatctacttgt- |
41034472 |
T |
|
| Q |
634 |
ttgtgtatgtctttactcaaatttcatggcctctattagcatattcaattgtgtattcctaatcaactaacctacgcaaacctttattatcgtacattca |
733 |
Q |
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| T |
41034473 |
----gtatgtctttactcaaatttcatggcctctattagcatattcaattgtgtattcctaatcagccaacctacgcaaacctttattatcgtacattca |
41034568 |
T |
|
| Q |
734 |
atttgtaatgtgtaagttgtaactaataactacgcaacatttccggaagggcattgtaaactttgtgataaaatatgatatgtaactatgcatgatattg |
833 |
Q |
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||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034569 |
atttgtaatgtgtaagttgtaac---taactatgcaacatttctggaagggtattgtaaactttgtgataaaatatgatatgtaactatgcatgatattg |
41034665 |
T |
|
| Q |
834 |
cattgtagtctagacacttgtggaattggt-aatgtgtgtggtggtatttatgatagggaaaacatc-attac-aggtgtttctatgggt-atatttcct |
929 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||| ||||| |||||||||||||| | |||||| || |
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| T |
41034666 |
cattgtagtctagacacttgtggaattggtaaatgtgtgttgtggtaattatgata-ggaaaacatcaattacaaggtgtttctatggttaatattt-ct |
41034763 |
T |
|
| Q |
930 |
ttctatttgt-aaagcagctgg--tggtaataaggtggtgtgttaaggtgacgcattaggagtaatta |
994 |
Q |
| |
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|||||||||| ||| ||||||| ||| ||| |||||||||||| |||||| | |||||||||||||| |
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| T |
41034764 |
ttctatttgtaaaaacagctgggttggaaattaggtggtgtgtttaggtgaaggattaggagtaatta |
41034831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 41033649 - 41033691
Alignment:
| Q |
49 |
aatatatgattttttgacaacttgttacttaaatacatgtcga |
91 |
Q |
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| T |
41033649 |
aatatatgattttttgacaacttgttacttaaatatatgtcga |
41033691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 41029996 - 41030034
Alignment:
| Q |
196 |
taagcagtaagatagataggactctcctcaatgttaata |
234 |
Q |
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||||| ||||||||||||||||||||||||||| ||||| |
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| T |
41029996 |
taagctgtaagatagataggactctcctcaatgctaata |
41030034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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