View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-4 (Length: 570)
Name: NF1526R-Insertion-4
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Complemental strand, 33016186 - 33015655
Alignment:
| Q |
9 |
agaaggtgaattcatagaataccttgccaatagaggtgattccccgtttaccaagagatttccctaaaaccatcagcttggagcgcaagttatccatagt |
108 |
Q |
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| T |
33016186 |
agaaggtgaattcatagaataccttgccaatagaaatgattccccgtttaccaagagatttccctataaccatcagcttggagcgcaagttatccatagt |
33016087 |
T |
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| Q |
109 |
aaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactcatccaagccagtaatatactcctcttcaggaatatctgttgcg |
208 |
Q |
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| T |
33016086 |
aaaaggtgatgacccttttggccatatcattattacatgcaagttgtgtttacactcatccaagccagtaatatactcctcttcaggaatttctgttgcg |
33015987 |
T |
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| Q |
209 |
attcatcaccttttttgcatggttgaggtaactaactgattggaacatcacaaacattgctaagagcttgtgcaaacgnnnnnnnnnnnnnnnnnggtca |
308 |
Q |
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| T |
33015986 |
attcatcaccttttttgcatggatgaggtaactaactgattggaacatcacaaacattgctaagagcttgtgcaaacgtttttttgttgttttttggtca |
33015887 |
T |
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| Q |
309 |
cggtgacagggctggggataacctttgtgttattgttggtggaaattggtggatcggtttgagaaacaagctggcatggccaatgtatgatgaggtttgg |
408 |
Q |
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| T |
33015886 |
cggtgacagggctagggataacctttgtgttattgttggtggaaattggtggatcggtttgagaaacaagctggcatggccaatgtatgatgaggtttgg |
33015787 |
T |
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| Q |
409 |
atcattgggaggtggtggaggtcatggccgaaggtggtggtttgtggcggaattttaggtttctttagttggaaggaaaggtggtgaacaatnnnnnnnn |
508 |
Q |
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| T |
33015786 |
atcatt-tgaggtggtggaggtcattgctcaaggtggtggtttgtggcggaattttaggtttctttagtaggaaggaaaactggtgaacaataaaaaaat |
33015688 |
T |
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| Q |
509 |
ntttctcacataaatctccagagcacataatcaa |
542 |
Q |
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| T |
33015687 |
a-ttctcacataaatctccagagcacataatcaa |
33015655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 16179853 - 16179665
Alignment:
| Q |
68 |
ttccctaaaaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactcat |
167 |
Q |
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| T |
16179853 |
ttccataagaccttcaacttggcgcgcatgctatctatggtaacaggtg-tgaccctttaggccatattattctcccatgcaaattgtggttacactctt |
16179755 |
T |
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| Q |
168 |
ccaagccagtaatatactcctcttcaggaatatctgttgcgatt-catcaccttttttgcatggttgaggtaactaactgattggaacat |
256 |
Q |
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| T |
16179754 |
ctaatccagcaatatactcatcttcaggaatttcaattgcaattccatctcctttcttgcatggctgaggtaattgactgattggaacat |
16179665 |
T |
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