View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-5 (Length: 551)
Name: NF1526R-Insertion-5
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Complemental strand, 33993049 - 33992507
Alignment:
| Q |
9 |
ccttaatcgtggtcctgttacggttaaggctggttgcagccatgttgcgatccttgataatcacattcaaatataactaacgaataatgatgcctcaatg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993049 |
ccttaatcgtggtcctgttacggttaaggctggttgcagccatgttgcgatccttgataatcacattcaaatataactaacgaataatgatgcctcaatg |
33992950 |
T |
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| Q |
109 |
acccataacttatgggcctttttaaaaaatatggttataaataaagtcatttacaacatgcttactctggctcgtttggagcatcctctgggtctacagt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992949 |
gcccataacttatgggcctttttaaaaaatatggttataaataaagtcatttacaacatgcttactctggctcgtttggagcatcctctgggtctacagt |
33992850 |
T |
|
| Q |
209 |
caacatgtacatatcctttttaggttcatttgctggatcttccaaaacatcacccttcattggcacaaattggaaacgtataagagaaaatgtcttcact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
33992849 |
caacatgtacatatcctttttaggttcatttgctggatcttccaaaacatcacccttcattgtcacaaattggaagcgtataagagaaaatgtcttcact |
33992750 |
T |
|
| Q |
309 |
tttgaacgaaatcttaaatgagggaagaaaagaaatgtcgtgacaacaaatcataaaacatagtattggttaccttcaattagattgagagctgcaatta |
408 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33992749 |
tttgaacgaaatcttaaatgagggaagaaaaaaaatgtcgtgacaacaaatcataaaacatagtattggttactttcaattagattgagagctgcaatta |
33992650 |
T |
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| Q |
409 |
agataacttgaaaacctacctcatgagttatgtgccaaaggttcctatccctgctatatatggattttttggttacaggaaccggtacattatgcttctt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33992649 |
agataacttgaaaacctacctcatgagttatgtgccaaaggttcctatccctgctatatatggattttttggttacaggaaccggtacatcatgcttctt |
33992550 |
T |
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| Q |
509 |
agcatactcaatagcatcttctctccctgtaatatcccactcc |
551 |
Q |
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| T |
33992549 |
agcatactcaatagcatcttctctccctgtaatatcccactcc |
33992507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 161 - 545
Target Start/End: Complemental strand, 33999760 - 33999365
Alignment:
| Q |
161 |
acaacatgcttactctggctcgtttggagcatcctctgggtctacagtcaacatgtacatatcctttttaggttcatttgctggatcttccaaaacatca |
260 |
Q |
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|||||||||||| ||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
33999760 |
acaacatgcttagtctggttgatttggagcgtcctctgggtctacagtcaacatgtagatatccttttttggttcatttgctgaatcttccaaaacatca |
33999661 |
T |
|
| Q |
261 |
cccttcattggcacaaattggaaacgtataagagaaaatgtcttcacttttgaacgaaatcttaaatgagggaagaaaagaaatgtcgtgacaacaaatc |
360 |
Q |
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|||||||||| ||||||| ||||| |||||||||||||||||||||||||||| | |||||| || || | | ||| ||| |||||||||||||| |
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| T |
33999660 |
cccttcattgtcacaaatcggaaatttataagagaaaatgtcttcacttttgaatgtgatcttacattag---aaataag-tatgccgtgacaacaaatc |
33999565 |
T |
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| Q |
361 |
ataaaacatagtattggttaccttcaattagattgag-------ag-ctgcaattaagataacttgaaaacctacctcatgag-------ttatgtgcca |
445 |
Q |
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||||||||||||||| |||| | |||| ||| || | || || ||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
33999564 |
ataaaacatagtatttgttatcatcaactagcttccggactaccagtctacaattaagataacttgaaaacttacctcatgagacatgatttatgtgcca |
33999465 |
T |
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| Q |
446 |
aaggttcctatccctgctatatatggattttttggttacaggaaccggtacattatgcttcttagcatactcaatagcatcttctctccctgtaatatcc |
545 |
Q |
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| T |
33999464 |
aaggttcctatccctactatatatggattttttggttataggaatcggaacgttatgcttcttggcatactcaatagcatcttctctccctgtaatatcc |
33999365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 441 - 547
Target Start/End: Original strand, 18854204 - 18854310
Alignment:
| Q |
441 |
tgccaaaggttcctatccctgctatatatggattttttggttacaggaaccggtacattatgcttcttagcatactcaatagcatcttctctccctgtaa |
540 |
Q |
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||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
18854204 |
tgccataggttcctatccctgctatatatggatttctttgtcactggaacgggaacattatgctttttagcatactcaatggcatcttctctccctgtaa |
18854303 |
T |
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| Q |
541 |
tatccca |
547 |
Q |
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| T |
18854304 |
tatccca |
18854310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 18853213 - 18853293
Alignment:
| Q |
185 |
tggagcatcctctgggtctacagtcaacatgtacatatcctttttaggttcatttgctggatcttccaaaacatcaccctt |
265 |
Q |
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|||||||||||| |||||||||| || |||||||||||||||||| || ||||| ||||| |||||||||| ||| ||||| |
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| T |
18853213 |
tggagcatcctccgggtctacagacatcatgtacatatcctttttgggctcattagctgggtcttccaaaatatcgccctt |
18853293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 42867187 - 42867297
Alignment:
| Q |
441 |
tgccaaaggttcctatccctgctatatatggattttttggttacaggaaccggtacattatgcttcttagcatactcaatagcatcttctctccctgtaa |
540 |
Q |
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||||| |||||||||||||||||||| ||||||||||| || || ||||| || || |||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
42867187 |
tgccataggttcctatccctgctatagatggatttttttgtcaccggaacaggaacgttatgctttttagcgtactcgatggcatcttctctccctgtaa |
42867286 |
T |
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| Q |
541 |
tatcccactcc |
551 |
Q |
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||||||||||| |
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| T |
42867287 |
tatcccactcc |
42867297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 42866268 - 42866348
Alignment:
| Q |
185 |
tggagcatcctctgggtctacagtcaacatgtacatatcctttttaggttcatttgctggatcttccaaaacatcaccctt |
265 |
Q |
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|||||||||||| |||||||||| || ||||||||||||||| || |||||||| || || |||||||||| ||||||||| |
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| T |
42866268 |
tggagcatcctccgggtctacagacatcatgtacatatccttcttgggttcattagccgggtcttccaaaatatcaccctt |
42866348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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