View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-7 (Length: 462)
Name: NF1526R-Insertion-7
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 161 - 462
Target Start/End: Original strand, 34608449 - 34608747
Alignment:
| Q |
161 |
ccatagttgttatgctcacttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg |
260 |
Q |
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| T |
34608449 |
ccatcgttgttatgctcgcttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg |
34608548 |
T |
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| Q |
261 |
aatttgaaagattaaaaaatgatatggttggtctgagaggatgattatcgagctgcttagatatgccgcctattgaggttgatatgtcgatatgcatgtc |
360 |
Q |
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| T |
34608549 |
aatttgaaagattaaaaaatgatatggttggtctgagaggatgatt---gagctgcttagatatgccgcctattgaggttgatatgccgatatgcatgtt |
34608645 |
T |
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| Q |
361 |
gtctgcctggttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgcaaat |
460 |
Q |
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| T |
34608646 |
gtctgcctggttctgctgaattgtggtgaggtgatgattcctgtgaagttggttgatcgtcatcccctagtgagacgaaggggattgtatacctgcaaat |
34608745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 34608239 - 34608391
Alignment:
| Q |
9 |
aaacgagcctctaactcaaacagaataacatagttcagttagaatagtttttgccaacactgtgtagctgaattaacaagttgtaattgacttgtgctcc |
108 |
Q |
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| T |
34608239 |
aaacaagcctctaactcaaacagaataacatagttcagttagaatagtttttgccaacactgtgtagctgaattaacaagttgtaattgacttgtgatcc |
34608338 |
T |
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| Q |
109 |
cagatgtagcaacatttggatgctccagagtgctgcaacaccttgcttgcatc |
161 |
Q |
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| T |
34608339 |
cagatgtagcaacatttggatgctccagagtgctgcaacaccttgcttgcatc |
34608391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 34604757 - 34604830
Alignment:
| Q |
370 |
gttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggg |
443 |
Q |
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| T |
34604757 |
gttctgatgaactgtggtgaggtgatgattacgatgaagttggttgatcgtcatctcctggtgagacgaagggg |
34604830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 34594050 - 34594134
Alignment:
| Q |
9 |
aaacgagcctctaactcaaacagaataaca---tagttcagttagaatagtttttgccaac---actgtgtagctgaattaacaa |
87 |
Q |
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| T |
34594050 |
aaacaagcctctaactgaaacagaataacaacatagttcagttagaatattttttgccaacagtactgtatagatgaattaacaa |
34594134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 27913361 - 27913271
Alignment:
| Q |
365 |
gcctggttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgc |
456 |
Q |
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| T |
27913361 |
gcctggttctgttgagctgtggtggggtgatgattatggtga-gatgggtgatcgtcatcccccgatgagacgaagggggttgtgtacctgc |
27913271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 16321564 - 16321510
Alignment:
| Q |
403 |
gtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgca |
457 |
Q |
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| T |
16321564 |
gtgaggttggttgatcgtcagcctcccgtgagacgaagagggttgtgtatctgca |
16321510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 457
Target Start/End: Original strand, 23593619 - 23593703
Alignment:
| Q |
374 |
tgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaa-gggggttgtgtacctgca |
457 |
Q |
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| T |
23593619 |
tgctgaactgtggtgggatgataattctagtgaggttggttgatctttagcctctagtgaaacgaaggggggttgtgtacctgca |
23593703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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