View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-8 (Length: 347)
Name: NF1526R-Insertion-8
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 1092204 - 1091866
Alignment:
| Q |
9 |
tagggattgcatgtccagccagcagcttgtggacttcatacatggccagttaaagacggtaagttttcgattatcaccttgtttactgtacagatagaca |
108 |
Q |
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| T |
1092204 |
tagggattgcatgtccagccagcagcttgtggacttcatacatggccagttaaagacggtaagttttcgattatcaccttgtttactgtacagatagaca |
1092105 |
T |
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| Q |
109 |
tatcttgaatgtagcattcacatggctccaattatagaatctggttgttacatttacatcaaatcatgattatgcaggagaataaactttctgtggtttg |
208 |
Q |
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| T |
1092104 |
tatcttgaatgtagcattcacatggctccaattatagaatctggttgttacatttacatcaaatcatgattatgcaggagaataaactttctgtggtttg |
1092005 |
T |
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| Q |
209 |
tgagaaagtattcgataggtgcttgggaccaacagctggtggtgagggatgtgataacatgaccatgatcttgattcggttcaaaaatcctctgacttca |
308 |
Q |
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| T |
1092004 |
tgagaaagtattcgataggtgcttggcaccaacagctggtggtgagggatgtgataacatgaccatgatcttgattcagttcaaaaatcctctgacttca |
1091905 |
T |
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| Q |
309 |
gatgcttctgtcacagaccagcctgagtcatctgttcaa |
347 |
Q |
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| T |
1091904 |
gatgcttctgtcacagaccagcctgagtcatctgttcaa |
1091866 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 48836045 - 48836102
Alignment:
| Q |
238 |
caacagctggtggtgagggatgtgataacatgaccatgatcttgattcggttcaaaaa |
295 |
Q |
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| T |
48836045 |
caactgctggtggcgaaggatgtgataacatgaccatgatcttggtgcagttcaaaaa |
48836102 |
T |
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