View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526R-Insertion-9 (Length: 317)
Name: NF1526R-Insertion-9
Description: NF1526R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526R-Insertion-9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 162 - 317
Target Start/End: Original strand, 39689029 - 39689184
Alignment:
| Q |
162 |
tgttggcatttttccaacaatacctatggttttaacggtcctaactaaaagggtgccatttagcctagaccatacttaagcttgtccatgattgattatt |
261 |
Q |
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| T |
39689029 |
tgttggcatttttccaacaatacctatggttttaatggtcctaactaaaagggtgccatttagcatagaccatacttaaacttgtccatgattgattatt |
39689128 |
T |
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| Q |
262 |
ctacttttttaccattagatttagttccttttactctcaccaaatcctttccctca |
317 |
Q |
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| T |
39689129 |
ctacttttttaccattagatttagttccttttactctcaccaaatcctttccctca |
39689184 |
T |
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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 39688845 - 39688968
Alignment:
| Q |
41 |
tccatgctatgataacaacagtgttacattcttcacctgtatagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattga |
140 |
Q |
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| T |
39688845 |
tccatgctatgataacaacagtgttacattcttcacctgtgtagataataacatatctttgattaattattgcacaatgataccaatatgtaaccattga |
39688944 |
T |
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| Q |
141 |
gataaatgtgaaagtgaaatgtgt |
164 |
Q |
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| T |
39688945 |
gataaatgtgaaagtgaaatgtgt |
39688968 |
T |
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