View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1526_high_1 (Length: 562)

Name: NF1526_high_1
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1526_high_1
NF1526_high_1
[»] chr7 (12 HSPs)
chr7 (192-546)||(4994875-4995229)
chr7 (49-150)||(4994774-4994875)
chr7 (11-52)||(23897240-23897281)
chr7 (11-54)||(4988217-4988260)
chr7 (11-54)||(4992315-4992358)
chr7 (50-99)||(2927922-2927971)
chr7 (50-99)||(13287710-13287759)
chr7 (468-521)||(25810823-25810876)
chr7 (11-52)||(6018358-6018399)
chr7 (11-52)||(9767785-9767826)
chr7 (11-52)||(10418557-10418598)
chr7 (11-52)||(23127950-23127991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (11-52)||(41339-41380)
[»] chr4 (2 HSPs)
chr4 (50-99)||(11252129-11252178)
chr4 (11-52)||(9849763-9849804)
[»] chr1 (9 HSPs)
chr1 (11-99)||(15526806-15526893)
chr1 (50-99)||(16817108-16817157)
chr1 (11-52)||(18098304-18098345)
chr1 (11-53)||(16363623-16363665)
chr1 (50-99)||(22426515-22426564)
chr1 (50-99)||(25402435-25402484)
chr1 (57-101)||(15542306-15542350)
chr1 (12-52)||(24283003-24283043)
chr1 (16-52)||(24901214-24901250)
[»] chr8 (7 HSPs)
chr8 (50-100)||(19265870-19265920)
chr8 (11-52)||(7985117-7985158)
chr8 (116-241)||(34184771-34184896)
chr8 (11-52)||(24380409-24380450)
chr8 (11-52)||(24381382-24381423)
chr8 (11-52)||(25180777-25180818)
chr8 (11-99)||(28275324-28275411)
[»] chr6 (4 HSPs)
chr6 (11-52)||(23644373-23644414)
chr6 (11-46)||(20080736-20080771)
chr6 (14-52)||(22564605-22564643)
chr6 (56-97)||(26820914-26820955)
[»] chr5 (9 HSPs)
chr5 (467-516)||(16612100-16612149)
chr5 (11-52)||(17469614-17469655)
chr5 (57-99)||(18939575-18939617)
chr5 (57-99)||(29988012-29988054)
chr5 (50-99)||(20548453-20548502)
chr5 (11-52)||(22845851-22845892)
chr5 (11-52)||(26122382-26122423)
chr5 (59-99)||(20860396-20860436)
chr5 (15-51)||(34488861-34488897)
[»] chr3 (7 HSPs)
chr3 (50-99)||(20021817-20021866)
chr3 (50-99)||(27074000-27074049)
chr3 (99-170)||(3213416-3213487)
chr3 (11-52)||(3114765-3114806)
chr3 (50-99)||(16228344-16228393)
chr3 (11-52)||(18535770-18535811)
chr3 (11-52)||(20891701-20891742)
[»] chr2 (7 HSPs)
chr2 (50-99)||(25537604-25537653)
chr2 (12-52)||(18553290-18553330)
chr2 (50-97)||(18458366-18458413)
chr2 (50-99)||(25196659-25196708)
chr2 (50-99)||(25922653-25922702)
chr2 (11-52)||(35680156-35680197)
chr2 (50-98)||(18120546-18120594)
[»] scaffold0451 (2 HSPs)
scaffold0451 (56-103)||(5784-5831)
scaffold0451 (11-52)||(10149-10190)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 192 - 546
Target Start/End: Original strand, 4994875 - 4995229
Alignment:
Q  192 accgtactacacagtgaatctactaatattctccataattgattttccatgttctccatataaccttgcaaaattaagaatcttataatctctagacaga 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4994875 accgtactacacagtgaatctactaatattctccctaattgattttccatgttctccatataaccttgcaaaattaagaatcttataatctctagacaga 4994974  T
Q  292 ggcaccaacatttcaacccattgaacatatgatttagtagctgacaattatatagaattgagtgaacctgttgaggcccgactgatggaacaatcaaatg 391  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4994975 ggcaccaacatttcaacccattgagcatatgatttagtagctgacaattatatagaattgagtgaacctgttgaggcccgactgatggaacaatcaaatg 4995074  T
Q  392 gatttgtggagcaacgccttcctaagattgtctcctttgcataccttgctcgtacaacctccaaacccatgtctcgttgaaactcattttgaaccatcgg 491  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4995075 gatttgtggagcaacgccttcctaagattgtctcccttgcataccttgctcgtacaacctccaaacccatgtctcgttgaaactcattttgaaccatggg 4995174  T
Q  492 tttcacattttcagcaagttgtttgaagacttaaaacatgatgtcatgtgtccac 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4995175 tttcacattttcagcaagttgtttgaagacttaaaacatgatgtcatgtgtccac 4995229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 4994774 - 4994875
Alignment:
Q  49 aaaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatcatttggttcaaggaaagagtaccatgagaaggttgtttatatcaatgata 148  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4994774 aaaaataaactaaaaaacatgctaaaaataacgtaagatgacctgtcatcatttggttcaaggaaagagtaccatgagaaggttgtttatatcaatgata 4994873  T
Q  149 aa 150  Q
    ||    
T  4994874 aa 4994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23897240 - 23897281
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23897240 cataggcaattgatataatactcctctgttttgctggtaaaa 23897281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4988217 - 4988260
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaaat 54  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  4988217 cataggcaattgatataatactcctctattttgttggtaaaaat 4988260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4992315 - 4992358
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaaat 54  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  4992315 cataggcaattgatataatactcctctattttgttggtaaaaat 4992358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 2927922 - 2927971
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||||||    
T  2927922 aaaataaactgaaaaacatgctaagaataacgtaagatgacctgtcatca 2927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 13287759 - 13287710
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||||    
T  13287759 aaaataaactgaaaaacatgttaagaataacgtaagatgacttgtcatca 13287710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 25810876 - 25810823
Alignment:
Q  468 ttgaaactcattttgaaccatcggtttcacattttcagcaagttgtttgaagac 521  Q
    ||||||||||||||||| ||| ||||||||| | ||||||||||||||| ||||    
T  25810876 ttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagac 25810823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 6018358 - 6018399
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||||||||| || |||||||||||||||||| ||||||||    
T  6018358 cataggcaattaatctaatactcctctgttttgttggtaaaa 6018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9767785 - 9767826
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| |||||||||||| |||| |||||||||    
T  9767785 cataggcaattgatctaatactcctctatttttctggtaaaa 9767826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 10418557 - 10418598
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||| | |||||||||||||||||||| ||||||    
T  10418557 cataggcaattgctctaatactcctctgttttgctagtaaaa 10418598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 23127991 - 23127950
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  23127991 cataagcaattgatctaatactcctctgctttgctggtaaaa 23127950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 41339 - 41380
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41339 cataggcaattgatctaatactcctctgttttgctggtaaaa 41380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 11252178 - 11252129
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  11252178 aaaataaactgaaaaacatgctaaaaataacgtaagatgacctgtcatca 11252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 9849804 - 9849763
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  9849804 cataggcaattgatctaatactcctttgttttgttggtaaaa 9849763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 15526893 - 15526806
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||  | ||||||||| ||||||||||||| |||||  ||||||||||||| ||| | ||||||| |||||| ||||||||    
T  15526893 cataggcaattactctaatactcccctgttttgctggt-aaaatctactgaaaaacatgataagaataacgtaagatgacatgtcatca 15526806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 16817157 - 16817108
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||||    
T  16817157 aaaataaactgaaaaacatgttaagaataacgtaagatgacttgtcatca 16817108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 18098345 - 18098304
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  18098345 cataggcaattgatctaatactcctctggtttgctggtaaaa 18098304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 16363623 - 16363665
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaaa 53  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  16363623 cataggcaattgatctaatactcctctattttgttggtaaaaa 16363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 22426564 - 22426515
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||| | | ||||| |||||||||||||||    
T  22426564 aaaataaactgaaaaacatgctaagaatgacgtaagatgacctgtcatca 22426515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 25402484 - 25402435
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||| | ||||| | |||||||||||||||    
T  25402484 aaaataaactgaaaaacatgctaagaataacgcaagatgacctgtcatca 25402435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 15542350 - 15542306
Alignment:
Q  57 actgaaaaacatgttaaaagtaacgtatgatgacctgtcatcatt 101  Q
    ||||||||||||||||| | ||||||| |||||| ||||||||||    
T  15542350 actgaaaaacatgttaagaataacgtaagatgacatgtcatcatt 15542306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 24283003 - 24283043
Alignment:
Q  12 ataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||| ||||||| ||||||||||||| |||||||||||||    
T  24283003 ataggaaattgatctaatactcctctgctttgctggtaaaa 24283043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 24901214 - 24901250
Alignment:
Q  16 gcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  24901214 gcaattgatctaatacttctctgttttgctggtaaaa 24901250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 19265870 - 19265920
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatcat 100  Q
    |||||||||||||||||||| ||| | ||||||| ||||||||||||||||    
T  19265870 aaaataaactgaaaaacatgctaagaataacgtaagatgacctgtcatcat 19265920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 7985117 - 7985158
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  7985117 catagacaattgatttaatactcctctgttttgctggtaaaa 7985158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 34184896 - 34184771
Alignment:
Q  116 agtaccatgagaaggttgtttatatcaatgataaagggaacaattgcaacttatgaaatttgttcaagtttctctcaccgtactacacagtgaatctact 215  Q
    |||||||||||||||| |||  |||| ||||||||||||| | |||||||||||| || | ||||  ||| | |||| || |||| |||||||||||       
T  34184896 agtaccatgagaaggtcgttcctatccatgataaagggaatagttgcaacttatggaactcgttctggttcccctcatcgcactatacagtgaatctttc 34184797  T
Q  216 aatattctccataattgattttccat 241  Q
     |||| |||| || ||||||||||||    
T  34184796 gatatgctccgtagttgattttccat 34184771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 24380450 - 24380409
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  24380450 cataggcaattgttctaatactcctctgttctgctggtaaaa 24380409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 24381423 - 24381382
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||| || |||||||||||||| |||||||||||    
T  24381423 cataggcaattgttaaaatactcctctgttctgctggtaaaa 24381382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 25180818 - 25180777
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| ||||||||||||| ||| |||||||||    
T  25180818 cataggcaattgatctaatactcctctggtttcctggtaaaa 25180777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 28275411 - 28275324
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||  | ||||||||||||||||| ||||| ||||   ||||||||||||| ||| | ||||||| |||||  ||||||||    
T  28275411 cataggcaattactctaatactcctctgttttcctggt-aaaacctactgaaaaacatgctaagaataacgtaagatgatttgtcatca 28275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 23644414 - 23644373
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  23644414 cataggcaattgatctaatactcctatgttttgctggtaaaa 23644373  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 20080736 - 20080771
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctg 46  Q
    |||||||||||||| |||||||||||||||||||||    
T  20080736 cataggcaattgatctaatactcctctgttttgctg 20080771  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 22564643 - 22564605
Alignment:
Q  14 aggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  22564643 aggcaattgctctaatactcctctgttttgctggtaaaa 22564605  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 26820914 - 26820955
Alignment:
Q  56 aactgaaaaacatgttaaaagtaacgtatgatgacctgtcat 97  Q
    |||||||||||||| ||| ||||||||| |||||||||||||    
T  26820914 aactgaaaaacatgctaagagtaacgtaagatgacctgtcat 26820955  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 16612100 - 16612149
Alignment:
Q  467 gttgaaactcattttgaaccatcggtttcacattttcagcaagttgtttg 516  Q
    ||||||||||||||| |||||| ||||||||| | |||||||||||||||    
T  16612100 gttgaaactcatttttaaccattggtttcacaatgtcagcaagttgtttg 16612149  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17469655 - 17469614
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  17469655 cataggcaattgctctaatactcctctgttttgctggtaaaa 17469614  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 18939575 - 18939617
Alignment:
Q  57 actgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    ||||||||||||||||| | ||||||| |||||||||||||||    
T  18939575 actgaaaaacatgttaagaataacgtaagatgacctgtcatca 18939617  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 29988012 - 29988054
Alignment:
Q  57 actgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  29988012 actgaaaaacatgctaaaaataacgtaagatgacctgtcatca 29988054  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 20548502 - 20548453
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||  | ||||||| |||||||||||||||    
T  20548502 aaaataaactgaaaaacatgctaggaataacgtaagatgacctgtcatca 20548453  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 22845892 - 22845851
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||| |||||| ||| ||||||||||||||||    
T  22845892 cataggcaattgatctaatacacctatgttttgctggtaaaa 22845851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 26122382 - 26122423
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||| |||||| | |||||||||||||||||||||||||||    
T  26122382 catagacaattgctctaatactcctctgttttgctggtaaaa 26122423  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 20860396 - 20860436
Alignment:
Q  59 tgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  20860396 tgaaaaacatgctaacagtaacgtaagatgacctgtcatca 20860436  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 34488861 - 34488897
Alignment:
Q  15 ggcaattgatataatactcctctgttttgctggtaaa 51  Q
    |||||||||| |||||||| |||||||||||||||||    
T  34488861 ggcaattgatctaatactcatctgttttgctggtaaa 34488897  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 20021866 - 20021817
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  20021866 aaaataaactgaaaaacatgctaagagtaacgtaagatgacatgtcatca 20021817  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 27074000 - 27074049
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| ||||||    
T  27074000 aaaataaactgaaaaacatgctaaaaataacgtaagatgacctatcatca 27074049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 3213487 - 3213416
Alignment:
Q  99 atttggttcaaggaaagagtaccatgagaaggttgtttatatcaatgataaagggaacaattgcaacttatg 170  Q
    |||||||  |||||||||||| |||||||||| ||||  ||| || |||||||||||||| | |||||||||    
T  3213487 atttggtggaaggaaagagtatcatgagaaggctgttcctattaacgataaagggaacaactccaacttatg 3213416  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 3114806 - 3114765
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  3114806 cataggcaattactctaatactcctctgttttgctggtaaaa 3114765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 16228393 - 16228344
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    ||||||||||||||| |||| ||| | ||||||| |||||||||||||||    
T  16228393 aaaataaactgaaaagcatgctaagaataacgtaagatgacctgtcatca 16228344  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 18535770 - 18535811
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  18535770 cataagcaattgatctaatactcctctgctttgctggtaaaa 18535811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 20891742 - 20891701
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    |||||||||||||||||||| |||| ||||||| ||||||||    
T  20891742 cataggcaattgatataatattcctatgttttgttggtaaaa 20891701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 25537604 - 25537653
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||||||    
T  25537604 aaaataaactgaaaaacatgctaagaataacgtaagatgacctgtcatca 25537653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 18553290 - 18553330
Alignment:
Q  12 ataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  18553290 ataggcaattgatctaatactcctctgttttactggtaaaa 18553330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 18458413 - 18458366
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcat 97  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||||||    
T  18458413 aaaatagactgaaaaacatgttaataataacttatgatgacctgtcat 18458366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 25196659 - 25196708
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||||||||||||||||||| | |||| || |||||| ||||||||    
T  25196659 aaaataaactgaaaaacatgttaagaataacataagatgacatgtcatca 25196708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 25922653 - 25922702
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatca 99  Q
    |||||||| ||||||||||| ||||| ||||||| ||| |||||||||||    
T  25922653 aaaataaattgaaaaacatgctaaaaataacgtaagataacctgtcatca 25922702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 35680197 - 35680156
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||| |||||| | |||||||||||||||||||||||||||    
T  35680197 catagacaattgctctaatactcctctgttttgctggtaaaa 35680156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 18120594 - 18120546
Alignment:
Q  50 aaaataaactgaaaaacatgttaaaagtaacgtatgatgacctgtcatc 98  Q
    |||||||||||||||||||| ||| | ||||||| |||||| |||||||    
T  18120594 aaaataaactgaaaaacatgctaagaataacgtaagatgacatgtcatc 18120546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 5784 - 5831
Alignment:
Q  56 aactgaaaaacatgttaaaagtaacgtatgatgacctgtcatcatttg 103  Q
    |||||||||||||||||||| ||||| | |||||||| ||||||||||    
T  5784 aactgaaaaacatgttaaaaataacgaaagatgacctttcatcatttg 5831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 10190 - 10149
Alignment:
Q  11 cataggcaattgatataatactcctctgttttgctggtaaaa 52  Q
    ||||| |||||||| |||||||||||||||||||| ||||||    
T  10190 catagacaattgatctaatactcctctgttttgctagtaaaa 10149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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