View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_high_14 (Length: 246)
Name: NF1526_high_14
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_high_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 40571707 - 40571478
Alignment:
| Q |
20 |
tcgctatctatggtatgtgtcactgtagaatgaattgttaatttctggtctgcatgtctatgcttgcgtatgtatgttggcttttgttggaataaattaa |
119 |
Q |
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| T |
40571707 |
tcgctatctatggtatgtgtcactgtagaatgaattgttaatttctggtctgcatgtctatgcttgcgtatgtatgttggcttttgttggaataaattaa |
40571608 |
T |
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| Q |
120 |
ttttctgacatgagtttttggacttaggtaacagcaagttaaatctaatttacaaaaacttnnnnnnnntg---taattagttatttcataaaatcacac |
216 |
Q |
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| T |
40571607 |
ttttctgacatgagtttttggacttatgtaacagcaagttaaatctaatttacaaaaacttaaaaaaaatgtactaattagttatttcataaaatcacac |
40571508 |
T |
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| Q |
217 |
ctaagtcatgacattataagcgacttcatc |
246 |
Q |
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| T |
40571507 |
ctaagtcatgacattataagcgacttcatc |
40571478 |
T |
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