View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_high_15 (Length: 238)
Name: NF1526_high_15
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43879434 - 43879217
Alignment:
| Q |
1 |
aggtgaaattcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaatatatagaagtcacacnnnnnnntggtgaaagtaaaacag |
100 |
Q |
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| T |
43879434 |
aggtgaaattcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaata----gaagtcacacaaaaaaatggtgaaagtaaaacag |
43879339 |
T |
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| Q |
101 |
atttcattcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacag |
200 |
Q |
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| T |
43879338 |
atttcattcatatacaccacaagaattaagatttatattat---ctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacag |
43879242 |
T |
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| Q |
201 |
aggattgtgaaacagacaattctga |
225 |
Q |
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| T |
43879241 |
aggattgtgaaacagacaattctga |
43879217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
107 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
166 |
Q |
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| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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