View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_high_5 (Length: 352)
Name: NF1526_high_5
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 33555058 - 33555381
Alignment:
| Q |
19 |
gaatcaatggggatgagttatccctacatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattgg |
118 |
Q |
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| T |
33555058 |
gaatcaatggggatgagttatccttacatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattgg |
33555157 |
T |
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| Q |
119 |
atatgattctgctctatgtaaacaatgacctcttcccattccatcatttccatctgcaatttcacaaagtcatcgaaattgtcatttacatttacggtat |
218 |
Q |
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| T |
33555158 |
atatgattctgctctatgtaaacaatgatctcttcccattccatcatttccatctgcaatttcacaaagtcattgaaattgtcatttacatttacggtat |
33555257 |
T |
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| Q |
219 |
ataatctgatcttagcagaaaataagaggaactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatt |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555258 |
ataatctgatcttagcagaaaataagaggtactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatt |
33555357 |
T |
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| Q |
319 |
tgaagtgaacacaattaacctatg |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
33555358 |
tgaagtgaacacaattaacctatg |
33555381 |
T |
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