View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_high_9 (Length: 287)
Name: NF1526_high_9
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 23147604 - 23147864
Alignment:
| Q |
17 |
aggaggtaggataggataaccatatcatattctattcaaatcttccgtttgacgcaccgaatggatatgataaattaaacctttgattaatcttatccag |
116 |
Q |
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| T |
23147604 |
aggaggtaggataggataaccatatcatattctattcaaatcttccgtttaacgtaccaaatagatatgataaattaaacctttgattcatcttatcc-g |
23147702 |
T |
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| Q |
117 |
tcaaatctttgtatttcctatcctaagtataggctgagttaaaaatatcttatccccttttcttattttttgcccatgctctacctgaaacaaatcggaa |
216 |
Q |
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| T |
23147703 |
tcaaacctttatattttctatcctaagtatagactgtgttagaaatatcatatccccttttcttattttttgcccatactttacctgaaacaaatcggaa |
23147802 |
T |
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| Q |
217 |
tctgtcttttctcctatcctctacgttcgcctacctccctccctccacctccatcttcatct |
278 |
Q |
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| T |
23147803 |
tctatcttttctcctatcttccacgttcgcctacctccctccctccatctccatcttcatct |
23147864 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 12855282 - 12855199
Alignment:
| Q |
123 |
ctttgtatttcctatcctaagtataggctgagttaaaaatatcttatccccttttcttattttttgcccatgctctacctgaaaca |
208 |
Q |
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| T |
12855282 |
ctttgtattttctatcctgataataagctgggttagaaatatcctatccctttttctta--ttttgcccatgctcttcctgtaaca |
12855199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 52343828 - 52343904
Alignment:
| Q |
24 |
aggataggataaccatatcatattctattcaaatc-----ttccgtttgacgcaccgaatggatatgataaattaaac |
96 |
Q |
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| T |
52343828 |
aggataggataaacatatcatatgctacttaaatcttccgttccgtttgacgcacc-aaaggatatgataaattaaac |
52343904 |
T |
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