View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_low_11 (Length: 271)
Name: NF1526_low_11
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 6752028 - 6752286
Alignment:
| Q |
1 |
aaggacaatttaacgggaaaaaacaataatagttggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaataatgattaaata---caa |
97 |
Q |
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| T |
6752028 |
aaggacaacttaacgggaaaaaacaataataataggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaataatgattaaataatacaa |
6752127 |
T |
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| Q |
98 |
atgtattaaaaacacnnnnnnnctacttacaattgatgataaacagcctcttaagggtgaccgtagaaacaatgaagattttgataactgcttttgacgc |
197 |
Q |
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| T |
6752128 |
atgtattacaaacacaaaaaaactacttacaattgatgataaacagcctcttaagggtgactgtagaaacaatgaagattttgataactgcttttgacgc |
6752227 |
T |
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| Q |
198 |
attcagattgaggacaatgaattgaaagcacttcttagtcttcctttttcgctatttag |
256 |
Q |
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| T |
6752228 |
attcagattgaggacaacgaattgaaagcacttcttagtcttcctttttcgctatttag |
6752286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 6760359 - 6760481
Alignment:
| Q |
130 |
ttgatgataaacagcctcttaagggtgaccgtagaaacaatgaagattttgataactgcttttgacgcattcagattgaggacaatgaattgaaagcact |
229 |
Q |
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| T |
6760359 |
ttgatgataaacaacctcttaagggtgactgtagaaacaatgaagatttggataactgcttttgacgcattgagattgaggacaatgaattgaaagcact |
6760458 |
T |
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| Q |
230 |
tcttagtcttcctttttcgctat |
252 |
Q |
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| T |
6760459 |
tcttagccttcttttttcactat |
6760481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 6760062 - 6760171
Alignment:
| Q |
4 |
gacaatttaacgggaaaaaa-caataatagttggtcccttcggggacatcccgtaaaattgaaacgatacaaagaccaat-aatgattaaatacaaatgt |
101 |
Q |
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|||||||||||||||||||| |||||| | | | ||||||| ||||||||| |||||||| ||||||||||| |||||| ||| |||||||| |||||| |
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| T |
6760062 |
gacaatttaacgggaaaaaaacaataacaatag-tcccttcagggacatccgataaaattggaacgatacaaataccaataaataattaaataaaaatgt |
6760160 |
T |
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| Q |
102 |
attaaaaacac |
112 |
Q |
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|| | |||||| |
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| T |
6760161 |
atcacaaacac |
6760171 |
T |
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