View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_low_17 (Length: 232)
Name: NF1526_low_17
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 5202570 - 5202648
Alignment:
| Q |
63 |
tgtctttaactttgttacagacgtcaaaattagagaattattttttcattaattttatttcttaaaaaatttggttagt |
141 |
Q |
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| T |
5202570 |
tgtctttaactttgttacagacgtcaaaatcagagatttatttattcattaattttatttcttaaaaaatttggttagt |
5202648 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 5202736 - 5202809
Alignment:
| Q |
159 |
taatagatatgagtaataaagtaaacaaattaataatagatattttaaccacctatgatttgttatacatgtgc |
232 |
Q |
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| T |
5202736 |
taataaatatgagtaataaagtaaacaaattaataatagatattttaaccacctataatttgttatacatgtgc |
5202809 |
T |
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