View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_low_2 (Length: 542)
Name: NF1526_low_2
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 530115 - 529870
Alignment:
| Q |
1 |
ccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcggtatatctttttgtcat |
100 |
Q |
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| T |
530115 |
ccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcgatatatctttttgtcat |
530016 |
T |
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| Q |
101 |
gaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctagctaccaacctttccgca |
200 |
Q |
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| T |
530015 |
gaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctagctaccaacctttccgca |
529916 |
T |
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| Q |
201 |
agattcaatatacttttctttccctcaggagtcaatctcactgtac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
529915 |
agattcaatatacttttctttccctcaggagtcaatctcactgtac |
529870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 298 - 526
Target Start/End: Complemental strand, 529818 - 529590
Alignment:
| Q |
298 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaacaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
397 |
Q |
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| T |
529818 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaaaaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
529719 |
T |
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| Q |
398 |
gctccaaaagcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaaaat |
497 |
Q |
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| T |
529718 |
gctccaaatgcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaacat |
529619 |
T |
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| Q |
498 |
taacaagacaataaataattgataaaatt |
526 |
Q |
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| T |
529618 |
taacaagacaacaaataattgataaaatt |
529590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 16828413 - 16828377
Alignment:
| Q |
7 |
ttggaggaactggaagccaaaaagaagtagcagcact |
43 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |
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| T |
16828413 |
ttggtggaacaggaagccaaaaagaagtagcagcact |
16828377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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