View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_low_3 (Length: 475)
Name: NF1526_low_3
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 43879487 - 43879685
Alignment:
| Q |
1 |
attttttccatcttgaaagctttatttgaatctatggtttcaaatcttattaatgtgtttgataaggtgagagaacacaaatgaaatgaagtcttaaaag |
100 |
Q |
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| T |
43879487 |
attttttccatcttgaaagctttatttgaatctatagtttcaaatcttattaaggtgtttgataaggtgagagaacacaaatgaaatgaagtcttaaaag |
43879586 |
T |
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| Q |
101 |
atcttaaatttgtagcatatggcaaattaaaagtaattaattcaatgcgtacaaatacagggagagtatctcaactttattctgggcataaagttccaa |
199 |
Q |
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| T |
43879587 |
atcttaaatttgtagcatagggcaaaataaaagtaattaattcaatgcgtacaaatacagggagagtatctcaactttattctgggcataaagttccaa |
43879685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 43879701 - 43879774
Alignment:
| Q |
258 |
gtcgtgtcgtgtgcatatttgaaatagaaatagaggcaccttcttaattggttattgtttcagtatggcatgtg |
331 |
Q |
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| T |
43879701 |
gtcgtgtcgtgtgcatatttgaaatagaaatagaggcaccttcttaattggttattgtttcagtatggcatgtg |
43879774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 43879856 - 43879935
Alignment:
| Q |
386 |
ttaactaaatactcattcaatcagttagc----tcaatcaatcgagctacacatcctcctactaagaaggttccttgaga |
461 |
Q |
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| T |
43879856 |
ttaactacatactcattcaatcagttagctagctcaatcaatcgagctgcacatcctcctactaacaaggttccttgaga |
43879935 |
T |
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