View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526_low_4 (Length: 357)
Name: NF1526_low_4
Description: NF1526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 47291121 - 47291429
Alignment:
| Q |
9 |
gagaagaacatgatttttcgttccattgtctgctcgattgctttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
108 |
Q |
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| T |
47291121 |
gagaagaacatgatttttggttccattgtctgctcgattgatttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
47291220 |
T |
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| Q |
109 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
208 |
Q |
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| T |
47291221 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
47291320 |
T |
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| Q |
209 |
cctcttaacaacagggctaaaagtttctacataatataatccttcagtttgtgtaaatcattttgctatgattacgtgcctgccttataatcctacataa |
308 |
Q |
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| T |
47291321 |
cctcttaacaacagggctaaaagtttctagataatataatccttcagtttgtgtaaatccttttgctatgattacgtgcctgccttataatcctacataa |
47291420 |
T |
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| Q |
309 |
ttatacaac |
317 |
Q |
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| T |
47291421 |
ttatacaac |
47291429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 47298053 - 47298105
Alignment:
| Q |
300 |
cctacataattatacaacgcagaaacact-tgagattctacaatggatttatt |
351 |
Q |
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| T |
47298053 |
cctacataattatacaaagcagaaacactaggagattctacaagggacttatt |
47298105 |
T |
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