View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15270_high_1 (Length: 521)

Name: NF15270_high_1
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15270_high_1
NF15270_high_1
[»] chr3 (16 HSPs)
chr3 (1-482)||(5004394-5004875)
chr3 (1-504)||(46404253-46404717)
chr3 (260-504)||(16975629-16975874)
chr3 (341-504)||(7336346-7336509)
chr3 (129-283)||(16975453-16975616)
chr3 (1-102)||(16975349-16975450)
chr3 (2-184)||(11967862-11968044)
chr3 (340-482)||(43277721-43277858)
chr3 (252-419)||(11937566-11937735)
chr3 (292-409)||(9104522-9104640)
chr3 (191-279)||(11937744-11937832)
chr3 (419-461)||(43277702-43277744)
chr3 (368-419)||(17542393-17542444)
chr3 (274-337)||(17542446-17542508)
chr3 (301-413)||(8731156-8731269)
chr3 (301-413)||(9083043-9083156)
[»] chr1 (24 HSPs)
chr1 (63-504)||(37666830-37667271)
chr1 (1-279)||(35761918-35762207)
chr1 (341-504)||(43407019-43407182)
chr1 (341-504)||(338499-338662)
chr1 (341-488)||(8421953-8422100)
chr1 (252-419)||(35761741-35761909)
chr1 (341-473)||(9537070-9537206)
chr1 (3-135)||(9537377-9537509)
chr1 (357-473)||(33007334-33007450)
chr1 (252-419)||(19198451-19198622)
chr1 (305-461)||(16075097-16075252)
chr1 (341-456)||(25921879-25921992)
chr1 (3-73)||(16074808-16074879)
chr1 (405-474)||(9537030-9537099)
chr1 (408-461)||(33007307-33007360)
chr1 (368-419)||(6836394-6836445)
chr1 (367-409)||(18472635-18472677)
chr1 (405-461)||(9537004-9537060)
chr1 (348-416)||(28561815-28561885)
chr1 (470-504)||(35761705-35761739)
chr1 (301-358)||(6836253-6836310)
chr1 (1-41)||(37667265-37667305)
chr1 (267-321)||(16075096-16075150)
chr1 (79-115)||(16074874-16074910)
[»] chr6 (12 HSPs)
chr6 (79-504)||(10751212-10751637)
chr6 (1-504)||(34636282-34636741)
chr6 (1-276)||(32450134-32450418)
chr6 (282-498)||(23260272-23260489)
chr6 (1-243)||(23260483-23260733)
chr6 (1-185)||(25005239-25005424)
chr6 (252-419)||(32449954-32450122)
chr6 (275-385)||(26182412-26182522)
chr6 (367-418)||(13773121-13773172)
chr6 (470-504)||(32449918-32449952)
chr6 (304-384)||(20555629-20555709)
chr6 (348-414)||(24163327-24163395)
[»] chr5 (17 HSPs)
chr5 (1-504)||(536909-537374)
chr5 (1-419)||(4557694-4558127)
chr5 (341-492)||(40691266-40691417)
chr5 (267-461)||(30910117-30910309)
chr5 (267-482)||(38001301-38001511)
chr5 (1-67)||(536825-536891)
chr5 (367-419)||(25101617-25101669)
chr5 (367-419)||(25160710-25160762)
chr5 (409-461)||(38001478-38001530)
chr5 (368-419)||(6309186-6309237)
chr5 (268-337)||(6309116-6309184)
chr5 (402-461)||(27026847-27026905)
chr5 (367-404)||(42861832-42861869)
chr5 (470-506)||(4557656-4557692)
chr5 (396-458)||(6309107-6309166)
chr5 (270-319)||(25101724-25101773)
chr5 (270-319)||(25160817-25160866)
[»] chr7 (23 HSPs)
chr7 (1-504)||(15873627-15874092)
chr7 (341-504)||(10288443-10288606)
chr7 (1-283)||(21491358-21491651)
chr7 (341-482)||(40106201-40106341)
chr7 (252-409)||(22077977-22078135)
chr7 (292-471)||(11036031-11036210)
chr7 (267-461)||(12911388-12911581)
chr7 (341-461)||(12196391-12196511)
chr7 (3-283)||(18367192-18367476)
chr7 (252-409)||(21491194-21491353)
chr7 (1-135)||(22077726-22077860)
chr7 (345-434)||(49170023-49170114)
chr7 (3-116)||(48576426-48576540)
chr7 (266-407)||(18367030-18367173)
chr7 (396-461)||(40106294-40106360)
chr7 (438-504)||(49169992-49170059)
chr7 (292-371)||(9993633-9993712)
chr7 (367-419)||(48653534-48653586)
chr7 (267-318)||(12196497-12196548)
chr7 (343-409)||(9993756-9993822)
chr7 (470-504)||(22078147-22078181)
chr7 (434-498)||(11036043-11036106)
chr7 (268-321)||(48653595-48653648)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-363)||(8935-9281)
[»] chr2 (17 HSPs)
chr2 (341-504)||(40447872-40448035)
chr2 (341-504)||(40729079-40729242)
chr2 (267-454)||(18292396-18292582)
chr2 (341-473)||(41339936-41340068)
chr2 (304-461)||(28266807-28266964)
chr2 (341-461)||(34397514-34397632)
chr2 (304-411)||(12774137-12774244)
chr2 (405-458)||(41339912-41339965)
chr2 (368-419)||(44789002-44789053)
chr2 (1-57)||(32735391-32735447)
chr2 (367-406)||(35670502-35670541)
chr2 (301-385)||(29270994-29271078)
chr2 (267-321)||(36731989-36732043)
chr2 (268-321)||(12774190-12774243)
chr2 (348-409)||(36731900-36731961)
chr2 (398-458)||(44788925-44788982)
chr2 (268-337)||(44788932-44789000)
[»] chr4 (17 HSPs)
chr4 (291-504)||(40459293-40459505)
chr4 (1-283)||(49499107-49499398)
chr4 (341-498)||(55162545-55162701)
chr4 (341-504)||(28968891-28969059)
chr4 (396-504)||(55162638-55162746)
chr4 (1-135)||(28969204-28969338)
chr4 (252-419)||(49499403-49499572)
chr4 (348-482)||(13652932-13653066)
chr4 (348-482)||(13661057-13661191)
chr4 (367-415)||(2761801-2761849)
chr4 (368-419)||(69782-69833)
chr4 (301-358)||(69635-69692)
chr4 (268-337)||(69712-69780)
chr4 (396-458)||(69703-69762)
chr4 (408-450)||(13653032-13653074)
chr4 (408-450)||(13661157-13661199)
chr4 (470-504)||(49499574-49499608)
[»] scaffold1838 (3 HSPs)
scaffold1838 (341-473)||(577-709)
scaffold1838 (3-116)||(271-384)
scaffold1838 (396-461)||(670-736)
[»] chr8 (10 HSPs)
chr8 (342-454)||(41958124-41958236)
chr8 (341-420)||(44436513-44436592)
chr8 (312-418)||(40841215-40841322)
chr8 (367-409)||(22635730-22635772)
chr8 (368-409)||(22816023-22816064)
chr8 (367-407)||(3189139-3189179)
chr8 (268-319)||(3189234-3189288)
chr8 (470-506)||(22815975-22816011)
chr8 (474-506)||(44436568-44436600)
chr8 (469-497)||(44436592-44436620)
[»] scaffold0041 (1 HSPs)
scaffold0041 (369-458)||(32991-33078)
[»] scaffold0013 (3 HSPs)
scaffold0013 (368-419)||(242732-242783)
scaffold0013 (470-504)||(242696-242730)
scaffold0013 (301-358)||(242878-242935)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 5004875 - 5004394
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004875 actaaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 5004776  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatg 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  5004775 acatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatacgagttttacg 5004676  T
Q  201 aaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttg 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5004675 aaaatatttcagtttggtccatgtggatgatgatgtgttaatatcttactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttt 5004576  T
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004575 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 5004476  T
Q  401 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtgg 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5004475 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaattgcaattatatttctgtgtgg 5004394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 46404717 - 46404253
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46404717 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatg 46404618  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatg 200  Q
     |||||         |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  46404617 gcattt---------ttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa--------------- 46404542  T
Q  201 aaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttg 300  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  46404541 --aatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttcgtggcgggttaataatatatttcttt 46404444  T
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 400  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||    
T  46404443 gtgg-------------ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgtttgtgcatggcatatgcatctgt 46404357  T
Q  401 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggata 500  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  46404356 gtggtgccttagtggcgggatttgcaattatattctctgtggatgccttagtggtgggaattgcaattatatttctgtgtggtgcctgtgtggcgggata 46404257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 260 - 504
Target Start/End: Original strand, 16975629 - 16975874
Alignment:
Q  260 tatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggg-tt 358  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  16975629 tatgcgtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggtt 16975728  T
Q  359 ttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16975729 ttagtctgcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgggaattgcaattatattctgtgtggatgccttagtggcggg 16975828  T
Q  459 aatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  16975829 aattgcaattatatttctgtgtggtgcctgtgtggcgggttatatc 16975874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 7336509 - 7336346
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336509 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 7336410  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7336409 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 7336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 129 - 283
Target Start/End: Original strand, 16975453 - 16975616
Alignment:
Q  129 tgtttttgtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaagatac--------gagttttatgaaaatatttcagtttggtc 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||     
T  16975453 tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggtt 16975552  T
Q  220 catgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 283  Q
    ||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  16975553 catgtggatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggt 16975616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 16975349 - 16975450
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16975349 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 16975448  T
Q  101 ac 102  Q
    ||    
T  16975449 ac 16975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 11968044 - 11967862
Alignment:
Q  2 ctaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatga 101  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| | ||||||  || ||||||    
T  11968044 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat-aaaatgttccgtagaatga 11967946  T
Q  102 catttattttatttttctattcctatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga 184  Q
    |||||||||||||||  ||| | ||||||  ||||||||||||| | |||||||||||  | |||| |||||||||||| ||||||    
T  11967945 catttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 340 - 482
Target Start/End: Complemental strand, 43277858 - 43277721
Alignment:
Q  340 tgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctg 439  Q
    |||| |||||||||||||||||||    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43277858 tgtgtcttagtggcgggttttagt----attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtg 43277763  T
Q  440 tggatgccttagtggcgggaatcgcaattatatttctgtgtgg 482  Q
    ||||| ||||| || || |||| ||||||||| ||||||||||    
T  43277762 tggataccttaatgacgcgaattgcaattata-ttctgtgtgg 43277721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 11937735 - 11937566
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  |||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  11937735 tatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcatattgcattgttgtgcctaagtg 11937636  T
Q  352 gcgggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |  || |||||| | |||| || ||||||||||| | |||||||||| ||||||||||||  ||||||||    
T  11937635 gttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtggtgcctgtgtggcggg 11937566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 9104522 - 9104640
Alignment:
Q  292 tatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcat 390  Q
    |||||||  |||||||||| ||||| ||  || |||||||||| || |||||||| ||||||| | |||||||| |||||||||||||||||| | ||||    
T  9104522 tatttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcat 9104621  T
Q  391 atgcatctgtgtggtgcct 409  Q
    |||||||||||||||||||    
T  9104622 atgcatctgtgtggtgcct 9104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 11937832 - 11937744
Alignment:
Q  191 gagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggc 279  Q
    ||||||||||||||||||| | |||||| ||||||||||||||| ||||||||  ||| ||| ||||  |||||| |||||||||||||    
T  11937832 gagttttatgaaaatattttattttggttcatgtggatgatgatgtgttaatacatgattgtgtttgcttatgaggttgccttagtggc 11937744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 461
Target Start/End: Complemental strand, 43277744 - 43277702
Alignment:
Q  419 gaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  43277744 gaattgcaattatattctgtgtggatgccttagtggcaggaat 43277702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 17542444 - 17542393
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |||||| ||||||||||| ||||||| |||||||||||||||  ||||||||    
T  17542444 attttcgtgatcatgcatcgcatatgtatctgtgtggtgcctgtgtggcggg 17542393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 17542508 - 17542446
Alignment:
Q  274 agtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcatt 337  Q
    |||||||||||| || |||||| ||  ||||||||||||||||||| ||| |||||||||||||    
T  17542508 agtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 17542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 8731156 - 8731269
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctg 399  Q
    |||||||||||| |||||| ||  |||||||||| || |  ||  | ||||| ||  |||||||| |||||||||||||||||| | |||||  |||||     
T  8731156 gtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatcta 8731255  T
Q  400 tgtggtgccttagt 413  Q
    ||||||||||||||    
T  8731256 tgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 9083043 - 9083156
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctg 399  Q
    |||||||||||| |||||| ||  |||||||||| || |  ||  | ||||| ||  |||||||| |||||||||||||||||| | |||||  |||||     
T  9083043 gtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatcta 9083142  T
Q  400 tgtggtgccttagt 413  Q
    ||||||||||||||    
T  9083143 tgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 63 - 504
Target Start/End: Complemental strand, 37667271 - 37666830
Alignment:
Q  63 ttttatatgatgtctgtatgataatgttatgtggaatgacatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactt 162  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  163 tgctgataaactaaataaatgaagatacgagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctat 262  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaaaatctgactgtatttgtctat 37667072  T
Q  263 gagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttag 362  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37667071 gagtttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggattttag 37666972  T
Q  363 tctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatc 462  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37666971 tctgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatt 37666872  T
Q  463 gcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37666871 gcaattatatttctgtgtggtgcctgtgtggcgggatatatc 37666830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 35762207 - 35761918
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataaga--gttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  35762207 actaaaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaa 35762108  T
Q  99 tgacatttattttatttttctattcctatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------agata 189  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||        | |||    
T  35762107 tgacatttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatatagaaata 35762008  T
Q  190 cgagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggc 279  Q
     | ||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  35762007 tgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttgcctatgagtttgccttagtggc 35761918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 43407182 - 43407019
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43407182 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 43407083  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43407082 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 43407019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 341 - 504
Target Start/End: Original strand, 338499 - 338662
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  338499 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 338598  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  338599 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggttatatc 338662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 341 - 488
Target Start/End: Original strand, 8421953 - 8422100
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||    
T  8421953 gtgccttagcggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgccttagtggcggaaattgcaattatattctgtgt 8422052  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctg 488  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||    
T  8422053 ggatgccttagtggcgggaattgtgattatatttctgtgtggtgcctg 8422100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 35761909 - 35761741
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||| ||||    
T  35761909 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgcattgttgtgcctaagtg 35761810  T
Q  352 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||  |||| ||| |||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  35761809 gcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 35761741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 341 - 473
Target Start/End: Complemental strand, 9537206 - 9537070
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatt----gcaattatattct 436  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  9537206 gtgccttagtggcgggttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtggcgggaattgcaagcaattatattct 9537107  T
Q  437 ctgtggatgccttagtggcgggaatcgcaattatatt 473  Q
     | | |||||||||||||||||||| |||||||||||    
T  9537106 atatagatgccttagtggcgggaattgcaattatatt 9537070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 9537509 - 9537377
Alignment:
Q  3 taaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgac 102  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  9537509 taaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgac 9537410  T
Q  103 atttattttatttttctattcctatatgttttt 135  Q
    |||||||| || || |||| | |||||||||||    
T  9537409 atttatttcatgttgctatgcgtatatgttttt 9537377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 33007450 - 33007334
Alignment:
Q  357 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcg 456  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||    
T  33007450 ttttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtggcgggaattgcaattatattatgtgtggatgtcttagtggcg 33007351  T
Q  457 ggaatcgcaattatatt 473  Q
    ||||| |||||||||||    
T  33007350 ggaattgcaattatatt 33007334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 19198622 - 19198451
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataaca---tcatattgcattattgtgcctta 348  Q
    |||||| |||||  ||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||| |||| ||| |    
T  19198622 tatttgactatgcatttgccttaatgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatcatattgcattgttgtacctaa 19198523  T
Q  349 gtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |||||||  |||| ||| |||||| ||||||||||| |  ||||||||||||||||||||||  ||||||||    
T  19198522 gtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgtgtggtgcctgtgtggcggg 19198451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 305 - 461
Target Start/End: Original strand, 16075097 - 16075252
Alignment:
Q  305 tgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgg 404  Q
    ||||||| ||||||| ||| |||||||| | || | |||||| ||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||    
T  16075097 tgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtgtgg 16075196  T
Q  405 tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    || ||||||||||||  || |||||||||| |  |||||||||||||||||||||||    
T  16075197 tgtcttagtggcggg-gttacaattatattttgggtggatgccttagtggcgggaat 16075252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 456
Target Start/End: Original strand, 25921879 - 25921992
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    |||||| |||| |||| ||| || | ||||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||| |||||||||| | |||    
T  25921879 gtgcctaagtgacgggattttgtttacattttcatgatcatacatgacatatgcatctgtgtggtgccttagtggtggg-attacaattatattttgtgt 25921977  T
Q  441 ggatgccttagtggcg 456  Q
    || |||||||||||||    
T  25921978 gg-tgccttagtggcg 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 16074808 - 16074879
Alignment:
Q  3 taaaatatgaatttatatggtaaaatttaaccttttataagagttattag-tttaattatattttatatgat 73  Q
    ||||||||||||| ||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 9537099 - 9537030
Alignment:
Q  405 tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatattt 474  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||| |||||| ||| ||||||||    
T  9537099 tgccttagtggcgggaattgcaattatattctatatagatgccttagtggtgggaattgcagttatattt 9537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 461
Target Start/End: Complemental strand, 33007360 - 33007307
Alignment:
Q  408 cttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  33007360 cttagtggcgggaattgcaattatattatgtgtggatgtcttagtggcgggaat 33007307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 6836394 - 6836445
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 6836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 18472677 - 18472635
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 409  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  18472677 cattttcatgatcatgcatagcatatgcatctgtgtggtgcct 18472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 9537060 - 9537004
Alignment:
Q  405 tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||||| |||||||||| ||||||| | |||||||||||||| |||||||||    
T  9537060 tgccttagtggtgggaattgcagttatattttgtgtggatgccttagcggcgggaat 9537004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 28561815 - 28561885
Alignment:
Q  348 agtggcgggttttagtctgcattttcatgatcatgcatggcatatgca--tctgtgtggtgccttagtggc 416  Q
    ||||||||| |||| | | ||||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  28561815 agtggcgggatttaattttcattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtggc 28561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 35761739 - 35761705
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    |||||||||||||||||||||||||||||||||||    
T  35761739 tatttctgtgtggtgcctgtgtggcgggatatatc 35761705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 6836253 - 6836310
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 358  Q
    |||||||||| ||||||||  || ||||||||||||| |||||||| |||||||||||    
T  6836253 gtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggtt 6836310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37667305 - 37667265
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttata 41  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  37667305 actaaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 16075096 - 16075150
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggat 321  Q
    |||||||| |||||||||||||  ||||| ||| ||||||||| |||||||||||    
T  16075096 ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 16074874 - 16074910
Alignment:
Q  79 tatgataatgttatgtggaatgacatttattttattt 115  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  16074874 tatgataatgtaatgtagaatgacatttattttattt 16074910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 79 - 504
Target Start/End: Complemental strand, 10751637 - 10751212
Alignment:
Q  79 tatgataatgttatgtggaatgacatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751637 tatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 10751538  T
Q  179 aaatgaagatacgagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtgg 278  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10751537 aaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtgg 10751438  T
Q  279 cgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgat 378  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751437 ctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgat 10751338  T
Q  379 catgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  10751337 catgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattatattctctgtggatgccttagtggcaggaattgcaattatatttctgt 10751238  T
Q  479 gtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||||||||    
T  10751237 gtggtgcctgtgtggcgggatatatc 10751212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 34636282 - 34636741
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34636282 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatg 34636381  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatg 200  Q
    ||||||        ||||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||                   
T  34636382 acattt--------tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaa--------------- 34636452  T
Q  201 aaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttg 300  Q
      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34636453 --aatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttt 34636550  T
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 400  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  34636551 gtgg-------------ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgt 34636637  T
Q  401 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggata 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  34636638 gtggtgccttagtggcgggatttgcaattatattctctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctatgtggcgggata 34636737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 32450418 - 32450134
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32450418 actaaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatg 32450319  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------agatacg 191  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||        | ||| |    
T  32450318 acatttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatatagaaatatg 32450219  T
Q  192 agttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagt 276  Q
    |||||||||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  32450218 agttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttgcctatgagtttgtcttagt 32450134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 282 - 498
Target Start/End: Complemental strand, 23260489 - 23260272
Alignment:
Q  282 gttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggg-ttttagtctgcattttcatgatca 380  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  381 tgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgt 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  23260389 tgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtgtggatgccttagtggcgggaattgcaattatatttctgtgt 23260290  T
Q  481 ggtgcctgtgtggcggga 498  Q
    ||||||||||||||||||    
T  23260289 ggtgcctgtgtggcggga 23260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23260733 - 23260483
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23260733 actaaaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatg 23260634  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------agatacg 191  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||        | ||| |    
T  23260633 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatatagaaatatg 23260535  T
Q  192 agttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaata 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  23260534 agttttatgaaaatatttcagtttggttcatgtggatgatgatgtgttaata 23260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 25005239 - 25005424
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 25005338  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaa 185  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25005339 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaa 25005424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 32450122 - 32449954
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  32450122 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 32450023  T
Q  352 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||| |||| ||| |||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  32450022 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 32449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 275 - 385
Target Start/End: Complemental strand, 26182522 - 26182412
Alignment:
Q  275 gtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttca 374  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||   ||||| || |||||||| ||||||||    
T  26182522 gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatcatattgcattgttgtgccactgtggcaggatttagtcttcattttca 26182423  T
Q  375 tgatcatgcat 385  Q
    |||||||||||    
T  26182422 tgatcatgcat 26182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 13773172 - 13773121
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 418  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  |||||||    
T  13773172 cattttcatgatcatgcatagcatatacatctgtgtggtgcctgtgtggcgg 13773121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 32449952 - 32449918
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    |||||||||||||||||||||||||||||||||||    
T  32449952 tatttctgtgtggtgcctgtgtggcgggatatatc 32449918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 20555629 - 20555709
Alignment:
Q  304 gtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca 384  Q
    |||| ||||||||||||||| ||||||||||||| ||||| ||  |||| ||| |||||| | |||| |||| ||||||||    
T  20555629 gtgctttagtggcgggataatatcatattgcattgttgtgtctatgtggtgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 24163327 - 24163395
Alignment:
Q  348 agtggcgggttttagtctgcatttt-catgatcatgcatg-gcatatgcatctgtgtggtgccttagtg 414  Q
    ||||||||| |||||||| |||||| |||||| ||||||  ||||||| |||||||||||| |||||||    
T  24163327 agtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtgtggtgtcttagtg 24163395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 536909 - 537374
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536909 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 537008  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatg 200  Q
     |||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  537009 gcattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa--------------- 537085  T
Q  201 aaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttg 300  Q
      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  537086 --aatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttt 537183  T
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 400  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  537184 gtgg-------------ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgt 537270  T
Q  401 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggata 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  537271 gtggtgccttagtggcgggatttgcaattatattctctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggata 537370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 4558127 - 4557694
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||| || |||||    
T  4558127 actaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgtagaatg 4558028  T
Q  101 acatttattttatttttctattcctatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaagatac------- 190  Q
    || |||||||||||||  ||| | |||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||| |||            
T  4558027 acttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatgaaaatatataaata 4557928  T
Q  191 -gagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcggg--ttaat 287  Q
     ||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||| ||||  |||||| ||||||||||||||||  |||||    
T  4557927 tgagttttatgaaaatatttcattttggttcatgtggatgatgatatgttaatacctgattgtgtttgcttatgaggttgccttagtggcgggtattaat 4557828  T
Q  288 aatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcatt-ttcatgatcatgca-t 385  Q
    |||||||||||  ||||||||||||||||| ||||| ||||||||||||| |||||||| |||||| || |||||||| |||| |||||||||||||| |    
T  4557827 aatatatttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggctggatttagtcttcattgttcatgatcatgcatt 4557728  T
Q  386 ggcatatgcatctgtgtggtgccttagtggcggg 419  Q
     |||||||||||| ||||||||||  ||||||||    
T  4557727 agcatatgcatctctgtggtgcctgtgtggcggg 4557694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 341 - 492
Target Start/End: Original strand, 40691266 - 40691417
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||    
T  40691266 gtgccttagtgacgggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggtgccttattggcggaaattgcaattatattctgtgt 40691365  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtg 492  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  40691366 ggatgccttagtggcgggaattacaattatatttctgtgtggtgcctgtgtg 40691417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 267 - 461
Target Start/End: Original strand, 30910117 - 30910309
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcat-tattgtgccttagtggcgggttttagtct 365  Q
    |||||||||||||  |||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  || | | ||||||||||||||| ||| |||||    
T  30910117 ttgccttagtggcaagttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt--atgtgtggtgccttagtggcggattt-agtct 30910213  T
Q  366 gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  30910214 gcatttccatgatcatgcatggcatatgcatctgtgtggtctcttagtagcgggaattgcaattatattctgtgtggatgccttagtgtcgggaat 30910309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 267 - 482
Target Start/End: Original strand, 38001301 - 38001511
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 366  Q
    |||||||||||||||||||||| ||||| ||   ||||||| ||||||||| | ||  || ||||| |  | | ||| ||||||||||||||||| ||||    
T  38001301 ttgccttagtggcgggttaatattatatatccgtgtggtgctttagtggcgagttataattatatt-ctgtgtggtgtcttagtggcgggttttaatctg 38001399  T
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaa 466  Q
    |||||||||||||  ||||| ||||||||||||||||||| || |||||||||||||||||||||||  | ||||||||| |||||||||||||| ||||    
T  38001400 cattttcatgatc--gcatgacatatgcatctgtgtggtgtct-agtggcgggaattgcaattatatcttgtgtggatgcattagtggcgggaattgcaa 38001496  T
Q  467 ttatatttctgtgtgg 482  Q
    ||||| ||||||||||    
T  38001497 ttata-ttctgtgtgg 38001511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 536825 - 536891
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatatttta 67  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  536825 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 25101669 - 25101617
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  25101669 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 25160762 - 25160710
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  25160762 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 38001478 - 38001530
Alignment:
Q  409 ttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| ||||||    
T  38001478 ttagtggcgggaattgcaattatattctgtgtggatgccttggtggtgggaat 38001530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 6309186 - 6309237
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  6309186 attttcatgatcatgcatggcatatgcatctgtgtggtgtctgtgtggcggg 6309237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  268 tgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcatt 337  Q
    |||||||||||||||||| || |||||| ||  ||||||||||||||||||| ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 27026847 - 27026905
Alignment:
Q  402 tggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||||||||||||| ||  ||||||||||| |||||||||||||||||| |||||    
T  27026847 tggtgccttagtggcggga-ttataattatattctgtgtggatgccttagtggcaggaat 27026905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 404
Target Start/End: Original strand, 42861832 - 42861869
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtgg 404  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  42861832 cattttcatgatcatgcatagcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 4557692 - 4557656
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatctg 506  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4557692 tatttctgtgtggtgcctgtgtggcgggttatatctg 4557656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 6309107 - 6309166
Alignment:
Q  396 tctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    ||||||||||||||||||||||||  || | |||||||||| ||||| |||||||||||||||    
T  6309107 tctgtgtggtgccttagtggcggg--ttactattatattctgtgtgg-tgccttagtggcggg 6309166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 25101773 - 25101724
Alignment:
Q  270 ccttagtggcgggttaataatatatttcttggtggtgccttagtggcggg 319  Q
    |||||||||||||||||   |||| ||||||||| |||||||||||||||    
T  25101773 ccttagtggcgggttaaacttataattcttggtgttgccttagtggcggg 25101724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 25160866 - 25160817
Alignment:
Q  270 ccttagtggcgggttaataatatatttcttggtggtgccttagtggcggg 319  Q
    |||||||||||||||||   |||| ||||||||| |||||||||||||||    
T  25160866 ccttagtggcgggttaaacttataattcttggtgttgccttagtggcggg 25160817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 15874092 - 15873627
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  15874092 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatg 15873993  T
Q  101 acatttattttatttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatg 200  Q
     |||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  15873992 gcattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa--------------- 15873916  T
Q  201 aaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttcttg 300  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  15873915 --aatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttcgtggcgggttaataatatatttcttt 15873818  T
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgt 400  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  15873817 gtgg-------------ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgt 15873731  T
Q  401 gtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggata 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  15873730 gtggtgccttagtggcgggatttgcaattatattctctgtggatgccttagtggcgggaattgcaattatatttccgtgtggtgcctgtgtggcgggata 15873631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 10288606 - 10288443
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288606 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 10288507  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10288506 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 10288443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21491651 - 21491358
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||| |||||    
T  21491651 actaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatg 21491553  T
Q  101 acatttattttatttttctattcctatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaa--------gat 188  Q
    ||||||||||||||||  ||| | ||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| |||||||         ||    
T  21491552 acatttattttattttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagtaat 21491453  T
Q  189 acgagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 283  Q
    | ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| | ||| ||||  |||||| |||||||||||||||||    
T  21491452 atgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgaggttgccttagtggcgggt 21491358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 341 - 482
Target Start/End: Original strand, 40106201 - 40106341
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  40106201 gtgccttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattatattctgtgt 40106300  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtgg 482  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||    
T  40106301 ggatgccttagtggcaggaattgcaattata-ttctgtgtgg 40106341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 252 - 409
Target Start/End: Original strand, 22077977 - 22078135
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  352 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcct 409  Q
    ||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  22078077 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 22078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 292 - 471
Target Start/End: Complemental strand, 11036210 - 11036031
Alignment:
Q  292 tatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatg-gcat 390  Q
    |||||||  |||||||||| |||||| |  || ||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||  ||||    
T  11036210 tatttctgtgtggtgcctt-gtggcgagtaaatatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcat 11036112  T
Q  391 atgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattata 471  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  11036111 atgcatctctgtggtgccttagtggcgggaattgcaattatattctgtgtggatgccttagtggcgggaattgcaattata 11036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 267 - 461
Target Start/End: Complemental strand, 12911581 - 12911388
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 366  Q
    ||||||||||| | ||||||||  ||||||||| ||||||||| ||||||||| ||  || ||||| |  | | || |||||||||||||||||||||||    
T  12911581 ttgccttagtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctgtgtggtaccttagtggcgggttttagtctg 12911483  T
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||| ||||||||    
T  12911482 cattttcataatcatgtatggcatatgcatctgtgtggtgccttagtggtaggaattgcaattatattctgtgtggatgtcttagtagcgggaat 12911388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 12196511 - 12196391
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  12196511 gtgccttagtggcggactttagtctgcattttcatgatcatacatggcatattcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 12196412  T
Q  441 ggatgccttagtggcgggaat 461  Q
    ||||||||||||| |||||||    
T  12196411 ggatgccttagtgacgggaat 12196391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 18367476 - 18367192
Alignment:
Q  3 taaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgac 102  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||      | ||| | ||||||| || |||||||    
T  18367476 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta-at------tatattaaaatgttacgtagaatgac 18367384  T
Q  103 atttattttatttttctattcctatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga--------agatacg 191  Q
    ||||||||||||||  ||| | ||||||  ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||        | ||| |    
T  18367383 atttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatatg 18367284  T
Q  192 agttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 283  Q
    || ||||| ||||||||||| |||||| ||| ||||||||||| |||||||| |||| ||| ||||  |||||| |||||||||||||||||    
T  18367283 agatttataaaaatatttcattttggttcatatggatgatgatgtgttaatacctgattgtgtttggttatgaggttgccttagtggcgggt 18367192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 252 - 409
Target Start/End: Complemental strand, 21491353 - 21491194
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  ||||||||||||| |||||||||||||||||||  |||||||||||||||||||| || ||||||||||||| |||||||| ||||    
T  21491353 tatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcattgttgtgcctaagtg 21491254  T
Q  352 gcgggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatctgtgtggtgcct 409  Q
    || || |||||||| |||| |||||||||||||| | |||||||||||||||||||||||    
T  21491253 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcct 21491194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 22077726 - 22077860
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    |||||||||| ||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  22077726 actaaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatg 22077825  T
Q  101 acatttattttatttttctattcctatatgttttt 135  Q
    ||||||  |||||||| |||| | |||||||||||    
T  22077826 acatttgctttattttcctatgcatatatgttttt 22077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 345 - 434
Target Start/End: Complemental strand, 49170114 - 49170023
Alignment:
Q  345 cttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgg-tgccttagtgg-cgggaattgcaattatatt 434  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  49170114 cttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggatgccttagtggccgggaattgcaattatatt 49170023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 48576426 - 48576540
Alignment:
Q  3 taaaatatgaatttatatggtaaaatttaaccttttataagagttattagttt-aattatattttatatgatgtctgtatgataatgttatgtggaatga 101  Q
    ||||||||||||||||||||||||||||||  | |||| | |||||||||||| |||||||| ||||||||||| ||||||||||||| |||  ||||||    
T  48576426 taaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatga 48576525  T
Q  102 catttattttatttt 116  Q
    |||||||| ||||||    
T  48576526 catttattctatttt 48576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 266 - 407
Target Start/End: Complemental strand, 18367173 - 18367030
Alignment:
Q  266 tttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtct 365  Q
    |||| ||||| ||||||||||||||| ||||||  |||||||||||||||| |||||| ||||||||||||| |||| ||| |||||| || |||| |||    
T  18367173 tttgtcttaggggcgggttaataatagatttctgtgtggtgccttagtggcaggataatatcatattgcattgttgtccctaagtggctggatttaatct 18367074  T
Q  366 gcatt-ttcatgatcatgca-tggcatatgcatctgtgtggtgc 407  Q
     |||| |||||||||| ||| | ||||||| || ||||||||||    
T  18367073 tcattgttcatgatcacgcattagcatatgtatttgtgtggtgc 18367030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 40106294 - 40106360
Alignment:
Q  396 tctgtgtgg-tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  40106294 tctgtgtggatgccttagtggcaggaattgcaattatattctgtgtggaagccttagtggcgggaat 40106360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 504
Target Start/End: Complemental strand, 49170059 - 49169992
Alignment:
Q  438 tgtggatgccttagtggc-gggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    |||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||| ||||||    
T  49170059 tgtggatgccttagtggccgggaattgcaattatattaatgtgtggtgcttgtgtggcgggttatatc 49169992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 9993633 - 9993712
Alignment:
Q  292 tatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattt 371  Q
    |||||||  |||||||||| |||| |||  || ||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  9993633 tatttctgtgtggtgcctttgtggtgggtaaatatcatattgcattgttgtgcctaagtggcgggatttagtttgcattt 9993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 48653586 - 48653534
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |||||||||||||||||||  ||||||||||||||||||| ||  ||||||||    
T  48653586 cattttcatgatcatgcataacatatgcatctgtgtggtgtctgtgtggcggg 48653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 12196548 - 12196497
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgg 318  Q
    |||||||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  12196548 ttgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcgg 12196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 9993756 - 9993822
Alignment:
Q  343 gccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgcct 409  Q
    |||| ||||||||| |||||| | |||| |||| |||||||||||||||||||  | ||||||||||    
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgcatggcatatgcacgtttgtggtgcct 9993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 504
Target Start/End: Original strand, 22078147 - 22078181
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||| |||||||||||||||||||||||||||||    
T  22078147 tatttatgtgtggtgcctgtgtggcgggatatatc 22078181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 11036106 - 11036043
Alignment:
Q  434 tctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtgg-tgcctgtgtggcggga 498  Q
    ||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||  |||||||||    
T  11036106 tctctgtgg-tgccttagtggcgggaattgcaattata-ttctgtgtggatgccttagtggcggga 11036043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 48653648 - 48653595
Alignment:
Q  268 tgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggat 321  Q
    |||||||||||||||||||   |||| ||||| ||||||||| |||||||||||    
T  48653648 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggat 48653595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 8935 - 9281
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935 actaaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 9034  T
Q  101 acatttatttta-tttttctattcctatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttat 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  9035 acatttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataa-----------------at 9117  T
Q  200 gaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctt 299  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9118 gaaaatatttcagattggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggttaataatatatttctt 9217  T
Q  300 ggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagt 363  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9218 tgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagt 9281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 341 - 504
Target Start/End: Original strand, 40447872 - 40448035
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40447872 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 40447971  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  40447972 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggttatatc 40448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 40729242 - 40729079
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||  ||    
T  40729242 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggtggaaattgcaattatattctgcgt 40729143  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||||    
T  40729142 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgtctgtgtggcaggttatatc 40729079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 267 - 454
Target Start/End: Complemental strand, 18292582 - 18292396
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 366  Q
    |||||||||||| ||||||||| ||||| |||  | ||||||||||||||||| ||  || |||||   |  | ||||||||||||||||||||||||||    
T  18292582 ttgccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataattatattttgtg-tggtgccttagtggcgggttttagtctg 18292484  T
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtgg 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18292483 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgtggatgccttagtgg 18292396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 341 - 473
Target Start/End: Complemental strand, 41340068 - 41339936
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41340068 gtgccttagtggcgggttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctctgt 41339969  T
Q  441 ggatgccttagtggcgggaatcgcaattatatt 473  Q
    ||||||||||||||||| ||| |||||||||||    
T  41339968 ggatgccttagtggcggaaattgcaattatatt 41339936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 304 - 461
Target Start/End: Complemental strand, 28266964 - 28266807
Alignment:
Q  304 gtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtg 403  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||  |||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||    
T  28266964 gtgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggcgggatttagtcttcattttaatgatcatgcatggcatatgcatctatgtg 28266865  T
Q  404 g-tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    | || |||||||||||| ||| |||||||||||| |||||||| |||||||||||||||    
T  28266864 gatgtcttagtggcggg-attacaattatattctatgtggatgtcttagtggcgggaat 28266807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 34397632 - 34397514
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||    
T  34397632 gtgccttagtggcgggttttagtctgcatt--catgatcatgcatggtatatgcatctgtgtggtgccttagtggcagaaattgcaattatattctgtgt 34397535  T
Q  441 ggatgccttagtggcgggaat 461  Q
    ||||| |||||||||||||||    
T  34397534 ggatgtcttagtggcgggaat 34397514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 12774244 - 12774137
Alignment:
Q  304 gtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtg 403  Q
    |||||||||||||||||||| |||||||  | || | |||||| ||||||||| || |   | ||||||||||||||||||| |||||||||||||||||    
T  12774244 gtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgcatcgcatatgcatctgtgtg 12774145  T
Q  404 gtgcctta 411  Q
    ||||||||    
T  12774144 gtgcctta 12774137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 41339965 - 41339912
Alignment:
Q  405 tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  41339965 tgccttagtggcggaaattgcaattatattctttgcggatgccttagtggcggg 41339912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 44789002 - 44789053
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  44789002 attttcatgatcatgcaaggcatatgcatctgtgtggtgcctgtgtggcggg 44789053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32735447 - 32735391
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaa 57  Q
    ||||||||||| ||| ||||||| |||||||||||||||||| || |||||||||||    
T  32735447 actaaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 35670541 - 35670502
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtg 406  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  35670541 cattttcatgatcatgcatagcatatgcatctgtgtggtg 35670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 29270994 - 29271078
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcat 385  Q
    ||||||||||||||| ||| ||| |||||||||| ||   |||||| |||| |||| |||| | | |||||||||||||||||||    
T  29270994 gtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcat 29271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 36732043 - 36731989
Alignment:
Q  267 ttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggat 321  Q
    ||||||||| ||||||||||||  ||||||||| ||| ||||| |||||||||||    
T  36732043 ttgccttaggggcgggttaatatcatatttcttagtgatgcctaagtggcgggat 36731989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 12774243 - 12774190
Alignment:
Q  268 tgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggat 321  Q
    ||||||||||||||| |||||  |||| |||| ||||||||| |||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggat 12774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 36731961 - 36731900
Alignment:
Q  348 agtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgcct 409  Q
    ||||||||| |||||| |  ||| |||| |||||||||||||||||||| |||||| |||||    
T  36731961 agtggcgggatttagtttttattatcattatcatgcatggcatatgcatttgtgtgctgcct 36731900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 44788925 - 44788982
Alignment:
Q  398 tgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    |||||||||||||||||| |||  || |||||||||||| ||||| |||||||||||||||    
T  44788925 tgtgtggtgccttagtggaggg--ttacaattatattctgtgtgg-tgccttagtggcggg 44788982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 44788932 - 44789000
Alignment:
Q  268 tgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcatt 337  Q
    ||||||||||| ||||||  | |||||| ||  ||||||||||||||||||| ||| |||||||||||||    
T  44788932 tgccttagtggagggttacaattatatt-ctgtgtggtgccttagtggcgggctaatatcatattgcatt 44789000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 291 - 504
Target Start/End: Original strand, 40459293 - 40459505
Alignment:
Q  291 atatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcat 390  Q
    ||||||||| ||||||||| ||||||||| ||  || |||||  ||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  40459293 atatttcttagtggtgcctaagtggcgggttataattatattctatg-ttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgtcat 40459391  T
Q  391 atgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtg 490  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  40459392 atgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgtctgtg 40459491  T
Q  491 tggcgggatatatc 504  Q
    ||||||| ||||||    
T  40459492 tggcgggttatatc 40459505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 49499107 - 49499398
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||| |  |||||| || |||||    
T  49499107 actaaaatatgaatttatatagtaaaatttaaccttttataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatg 49499205  T
Q  101 acatttattttatttttctattcctatatg-tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga--------agatac 190  Q
    ||||||||||||||||  ||| | |||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||        | |||     
T  49499206 acatttattttattttgatatgcatatatgttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatat 49499305  T
Q  191 gagttttatgaaaatatttcagtttggtccatgtggatgatgatatgttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 283  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| |||||||| || | ||| ||||  |||||| |||||||||||||||||    
T  49499306 gagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttagtggcgggt 49499398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 341 - 498
Target Start/End: Original strand, 55162545 - 55162701
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55162545 gtgccttggtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 55162644  T
Q  441 ggatgccttagtggcgggaatcgcaattatatttctgtgtgg-tgcctgtgtggcggga 498  Q
    || |||||||||||||||||| ||||||||| |||||||||| |||||  |||||||||    
T  55162645 gg-tgccttagtggcgggaattgcaattata-ttctgtgtggatgccttagtggcggga 55162701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 341 - 504
Target Start/End: Complemental strand, 28969059 - 28968891
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcat-----atgcatctgtgtggtgccttagtggcgggaattgcaattatattc 435  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||     
T  28969059 gtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattt 28968960  T
Q  436 tctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    | |||||||| ||| ||||||||||  ||||||||||||||||||||||| ||||||||||| ||||||    
T  28968959 tgtgtggatgtcttggtggcgggaaatgcaattatatttctgtgtggtgcatgtgtggcgggttatatc 28968891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 396 - 504
Target Start/End: Original strand, 55162638 - 55162746
Alignment:
Q  396 tctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaatcgcaattatatttctgtgtggtgcctgtgtggcg 495  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55162638 tctgtgtggtgccttagtggcgggaattgcaattatattctgtgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcg 55162737  T
Q  496 ggatatatc 504  Q
    || ||||||    
T  55162738 ggttatatc 55162746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28969338 - 28969204
Alignment:
Q  1 actaaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 100  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||    
T  28969338 actaaaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatg 28969239  T
Q  101 acatttattttatttttctattcctatatgttttt 135  Q
    |||||||||||||||| |||| | |||||||||||    
T  28969238 acatttattttattttgctatgcatatatgttttt 28969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 252 - 419
Target Start/End: Original strand, 49499403 - 49499572
Alignment:
Q  252 tatttgtctatgagtttgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 351  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||||||||| |||||||| ||||    
T  49499403 tatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtg 49499502  T
Q  352 gcgggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    || || |||||||| |||| |||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  49499503 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 49499572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 13652932 - 13653066
Alignment:
Q  348 agtggcgggttttagtct-gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgc 446  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | |||| |||     
T  13652932 agtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtgtgaatgt 13653031  T
Q  447 cttagtggcgggaatcgcaattatatttctgtgtgg 482  Q
    ||||||||||| ||| ||||||||| ||||||||||    
T  13653032 cttagtggcggaaattgcaattata-ttctgtgtgg 13653066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 13661057 - 13661191
Alignment:
Q  348 agtggcgggttttagtct-gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgc 446  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | |||| |||     
T  13661057 agtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtgtgaatgt 13661156  T
Q  447 cttagtggcgggaatcgcaattatatttctgtgtgg 482  Q
    ||||||||||| ||| ||||||||| ||||||||||    
T  13661157 cttagtggcggaaattgcaattata-ttctgtgtgg 13661191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 2761849 - 2761801
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgg 415  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2761849 cattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 69782 - 69833
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  69782 attttcatgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 69833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 69635 - 69692
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 358  Q
    |||||||||| ||||||||  || ||||||||||||| |||||||| |||||||||||    
T  69635 gtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggtt 69692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 69712 - 69780
Alignment:
Q  268 tgccttagtggcgggttaataatatatttcttggtggtgccttagtggcgggataacatcatattgcatt 337  Q
    ||||||||||||||||||  | |||||| ||  ||||||||||||||||||| ||| |||||||||||||    
T  69712 tgccttagtggcgggttacgattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 69780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 69703 - 69762
Alignment:
Q  396 tctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    ||||||||||||||||||||||||  || | |||||||||| ||||| |||||||||||||||    
T  69703 tctgtgtggtgccttagtggcggg--ttacgattatattctgtgtgg-tgccttagtggcggg 69762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 13653032 - 13653074
Alignment:
Q  408 cttagtggcgggaattgcaattatattctctgtggatgcctta 450  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||    
T  13653032 cttagtggcggaaattgcaattatattctgtgtggattcctta 13653074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 13661157 - 13661199
Alignment:
Q  408 cttagtggcgggaattgcaattatattctctgtggatgcctta 450  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||    
T  13661157 cttagtggcggaaattgcaattatattctgtgtggattcctta 13661199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 504
Target Start/End: Original strand, 49499574 - 49499608
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    |||||||||||||||||||||||||||| ||||||    
T  49499574 tatttctgtgtggtgcctgtgtggcgggttatatc 49499608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 577 - 709
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 440  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||| ||| |||    
T  577 gtgccttagtggcgagttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgatgccttagtggtgggaattgcaattatagtctgtgt 676  T
Q  441 ggatgccttagtggcgggaatcgcaattatatt 473  Q
    ||||||||||||||||||||| |||||||||||    
T  677 ggatgccttagtggcgggaattgcaattatatt 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 271 - 384
Alignment:
Q  3 taaaatatgaatttatatggtaaaatttaaccttttataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgac 102  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  271 taaaatataaatctatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgcc 370  T
Q  103 atttattttatttt 116  Q
    ||||||||||||||    
T  371 atttattttatttt 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 670 - 736
Alignment:
Q  396 tctgtgtgg-tgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcgggaat 461  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  670 tctgtgtggatgccttagtggcgggaattgcaattatattctgtgcggatgccttagtggcgggaat 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 41958236 - 41958124
Alignment:
Q  342 tgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtg 441  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41958236 tgccttagtgatgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgtg 41958137  T
Q  442 gatgccttagtgg 454  Q
    ||||| |||||||    
T  41958136 gatgctttagtgg 41958124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 44436513 - 44436592
Alignment:
Q  341 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggga 420  Q
    |||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  44436513 gtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtgtggtgcctgtgtggcggga 44436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 40841322 - 40841215
Alignment:
Q  312 gtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcctt 410  Q
    ||||||||  || ||||||||||||| ||||||||  || ||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||     
T  40841322 gtggcgggtaaatatcatattgcattgttgtgcctatgttgcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctg 40841223  T
Q  411 agtggcgg 418  Q
     |||||||    
T  40841222 tgtggcgg 40841215  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 22635772 - 22635730
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22635772 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 22635730  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 22816064 - 22816023
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 409  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  22816064 attttcatgatcatgcatggcatatgcatctgtgcggtgcct 22816023  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 3189179 - 3189139
Alignment:
Q  367 cattttcatgatcatgcatggcatatgcatctgtgtggtgc 407  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  3189179 cattttcatgatcatgcatgacatatgcatttgtgtggtgc 3189139  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 3189288 - 3189234
Alignment:
Q  268 tgccttagtggcgggttaataa---tatatttcttggtggtgccttagtggcggg 319  Q
    |||||||||||||||| | |||   |||| |||||||||||||||||||||||||    
T  3189288 tgccttagtggcgggtaattaaacttataattcttggtggtgccttagtggcggg 3189234  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 22816011 - 22815975
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatctg 506  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  22816011 tatttctgtgtggtgcttgtgtggcgggttatatctg 22815975  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 44436568 - 44436600
Alignment:
Q  474 tctgtgtggtgcctgtgtggcgggatatatctg 506  Q
    |||||||||||||||||||||||||||| ||||    
T  44436568 tctgtgtggtgcctgtgtggcgggatatttctg 44436600  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 497
Target Start/End: Original strand, 44436592 - 44436620
Alignment:
Q  469 atatttctgtgtggtgcctgtgtggcggg 497  Q
    |||||||||||||||||||||||||||||    
T  44436592 atatttctgtgtggtgcctgtgtggcggg 44436620  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Complemental strand, 33078 - 32991
Alignment:
Q  369 ttttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgtggatgccttagtggcggg 458  Q
    ||||||| |||||||||| ||||||||||||||||||||||  ||| ||||  |   ||||||||||| |||||||||||  ||||||||    
T  33078 ttttcattatcatgcatgacatatgcatctgtgtggtgcctgtgtgacggg--tcataattatattctgtgtggatgcctgtgtggcggg 32991  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 242783 - 242732
Alignment:
Q  368 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcggg 419  Q
    |||||||||||| ||||| |||||||||| ||||||||||||  ||||||||    
T  242783 attttcatgatcttgcatagcatatgcatatgtgtggtgcctgtgtggcggg 242732  T

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Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 242730 - 242696
Alignment:
Q  470 tatttctgtgtggtgcctgtgtggcgggatatatc 504  Q
    |||||||||||||||||||||||||||| ||||||    
T  242730 tatttctgtgtggtgcctgtgtggcgggttatatc 242696  T

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Target: scaffold0013; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 242935 - 242878
Alignment:
Q  301 gtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 358  Q
    |||||||||| ||| ||||  || ||||||||||||| ||||||||||||||| ||||    
T  242935 gtggtgcctttgtgacgggtaaatatcatattgcattgttgtgccttagtggcaggtt 242878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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