View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_high_11 (Length: 215)
Name: NF15270_high_11
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 40904755 - 40904573
Alignment:
| Q |
18 |
gaaacagtcattgaatttgtgttaacttcaatattaaagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaactaaatcaacc |
117 |
Q |
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| T |
40904755 |
gaaacagtcattgaatttgtgttaacttcaatcttaaagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaactaaatcaacc |
40904656 |
T |
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| Q |
118 |
ccaatgattcttgatgcaccagaaatccttgccccttcagcagcctaaattgtggtttaaagagaagagcacgagttatcttt |
200 |
Q |
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| T |
40904655 |
ccaatgattcttgatgcaccagaaatccttgccccttcagcagcctaaattgtggtttaaagagaagagcacgggttatcttt |
40904573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 40900184 - 40900062
Alignment:
| Q |
54 |
aagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaactaaatcaaccccaatgattcttgatgcaccagaaatccttgcccct |
153 |
Q |
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| T |
40900184 |
aagcatttgatggaataagaaa-gcactgtacctaattcaaatcggctggaaactaaatcaactccaatgattcttgatgcaccagatatcctggctcct |
40900086 |
T |
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| Q |
154 |
tcagcagcctaaattgtggtttaa |
177 |
Q |
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| T |
40900085 |
tcagcagcctaaattttggtttaa |
40900062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 40881511 - 40881400
Alignment:
| Q |
51 |
ttaaagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaactaaatcaaccccaatgattcttgatgcaccagaaatccttgcc |
150 |
Q |
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| T |
40881511 |
ttaaagcatttggtggaataagaaa-gcattttacctaattcgaaacggctggaaactaaatcgactccaatgattcttgatgcaccagatatccttgct |
40881413 |
T |
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| Q |
151 |
ccttcagcagcct |
163 |
Q |
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| T |
40881412 |
ccttcagcagcct |
40881400 |
T |
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