View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_high_4 (Length: 395)
Name: NF15270_high_4
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 15659286 - 15659438
Alignment:
| Q |
235 |
tagtggatgtcccattaacatgtcttcctgcataatannnnnnnnnn---aaggattctctttcttttcttttgattacgtctaaagaaagaatgttatt |
331 |
Q |
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| T |
15659286 |
tagtggatgtcccattaacatgtcttcctgcataatatttttttttttttaaggattctctttcttttcttttgattacgtctaaagaaagaatgttatt |
15659385 |
T |
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| Q |
332 |
caatatagtacgacaattaaataattatgtttttgtcgtttagtattattcat |
384 |
Q |
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| T |
15659386 |
caatatagtacgacaattaaataatgatgtttttgtcgtttagtattattcat |
15659438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 15659103 - 15659285
Alignment:
| Q |
19 |
aatatttaatttcatattaaatnnnnnnn-tattttaaattgtgaatgaatttgaactgacaaattaatttggaagattatgtggaagacctgtttgatt |
117 |
Q |
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| T |
15659103 |
aatatttaatttcatattaaataaaaaaaatattttaaattgtgaatgaatttgaactgacaaattaatttggaagagtatgtggaagacctgtttgatt |
15659202 |
T |
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| Q |
118 |
aattttgtcaaaaaaataataataaagnnnnnnnnnnnnnngaaggaataataaagtgtttgattattaaaatctcttgcatac |
201 |
Q |
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| T |
15659203 |
aattttgtcaaaaaaataataataaag-tgtttttttttttgaaggaataataaagtgtttgattattaaaatctcttgcatac |
15659285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 367
Target Start/End: Original strand, 15650218 - 15650381
Alignment:
| Q |
211 |
caaggaccacctatgattccttattagtggatgtcccattaacatgtcttcctgcataatannnnnnnnnn-------aaggattctctttcttttcttt |
303 |
Q |
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| T |
15650218 |
caaggaccacctatgattccttattagtggatgtcccattaacttgtctccctgcataatattattgtatttttttttaaggattctctttcttttcttt |
15650317 |
T |
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| Q |
304 |
tgattacgtctaaagaaagaatgttattcaatatagtacgacaattaaataattatgtttttgt |
367 |
Q |
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| T |
15650318 |
tgattacgtctaaagaaagaatgctagtcaatatagtacgactattaaataattatgtttttgt |
15650381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 15506675 - 15506719
Alignment:
| Q |
202 |
aaattattccaaggaccacctatgattccttattagtggatgtcc |
246 |
Q |
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| T |
15506675 |
aaattattccaaggaccacatatgattccttattagtggatgtcc |
15506719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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